YRC Public Data Repository - Protein Structure Prediction

Protein:	YDIV_ECOLI
Organism:	Escherichia coli
Length:	237 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDIV_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|89519310 - gi\|89519310\|gb\|ABD75787.1\| sensory box/GGDEF family protein [uncultured bacterium]	317.0	[0..1]	[236..626]
gi\|88947158, gi\|... - gi\|88947158\|ref\|ZP_01150169.1\| PAS:GGDEF [Desulfotomaculum reducens MI-1], gi\|88923371\|gb\|EAR42405.1...	312.0	[0..1]	[233..695]
gi\|48859207, gi\|... - gi\|67875521\|ref\|ZP_00504817.1\| PAS:GGDEF [Clostridium thermocellum ATCC 27405], gi\|67850552\|gb\|EAM46...	308.0	[0..1]	[236..605]
gi\|68177612, gi\|... - gi\|95928550\|ref\|ZP_01311297.1\| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfu...	306.0	[0..1]	[230..539]
gi\|27355863, gi\|... - gi\|27382691\|ref\|NP_774220.1\| hypothetical protein bll7580 [Bradyrhizobium japonicum USDA 110], gi\|27...	304.0	[0..1]	[236..1115]
gi\|114552933, gi... - gi\|114776847\|ref\|ZP_01451890.1\| hypothetical protein SPV1_11546 [Mariprofundus ferrooxydans PV-1], g...	304.0	[0..1]	[236..279]
gi\|48846537, gi\|... - gi\|78222177\|ref\|YP_383924.1\| diguanylate cyclase/phosphodiesterase [Geobacter metallireducens GS-15]...	303.0	[0..1]	[235..376]
gi\|119863313, gi... - gi\|119944709\|ref\|YP_942389.1\| diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) [...	301.0	[0..1]	[234..699]
gi\|39997142, gi\|... - gi\|39997142\|ref\|NP_953093.1\| sensory box/GGDEF family protein [Geobacter sulfurreducens PCA], gi\|399...	300.0	[0..1]	[237..505]
gi\|91708870, gi\|... - gi\|91774883\|ref\|YP_544639.1\| diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) ...	299.0	[0..1]	[237..605]

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Predicted Domain #1

Region A:
Residues: [1-237]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIFLENLYH SDCYFLPIRD NQQVLVGVEL ITHFSSEDGT VRIPTSRVIA QLTEEQHWQL  60
   61 FSEQLELLKS CQHFFIQHKL FAWLNLTPQV ATLLLERDNY AGELLKYPFI ELLINENYPH 120
  121 LNEGKDNRGL LSLSQVYPLV LGNLGAGNST MKAVFDGLFT RVMLDKSFIQ QQITHRSFEP 180
  181 FIRAIQAQIS PCCNCIIAGG IDTAEILAQI TPFDFHALQG CLWPAVPINQ ITTLVQR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	71.69897
Match:	2r6oA
Description:	No description for 2r6oA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits