YRC Public Data Repository - Protein Structure Prediction

Protein:	YDIK_ECOLI
Organism:	Escherichia coli
Length:	370 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDIK_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|68264132, gi\|... - gi\|68536533\|ref\|YP_251238.1\| hypothetical protein jk1447 [Corynebacterium jeikeium K411], gi\|6826413...	234.0	[0..5]	[343..169]
gi\|116513697, gi... - gi\|62515588\|ref\|ZP_00386989.1\| COG0628: Predicted permease [Lactobacillus delbrueckii subsp. bulgari... gi\|104773700, gi... - gi\|104773700\|ref\|YP_618680.1\| hypothetical protein Ldb0590 [Lactobacillus delbrueckii subsp. bulgari...	204.0	[0..20]	[358..38]
gi\|82615702 - gi\|82615702\|emb\|CAJ10689.1\| ATP/GTP-binding site motif A (P-loop):Protein of unknown function UPF011... gi\|82699601 - gi\|82699601\|ref\|YP_414175.1\| ATP/GTP-binding protein [Brucella melitensis biovar Abortus 2308] gi\|189023923, gi... - gi\|189023923\|ref\|YP_001934691.1\| ATP/GTP-binding protein [Brucella abortus S19], gi\|189019495\|gb\|ACD...	202.0	[0..9]	[356..10]
gi\|41583041, gi\|... - gi\|42518755\|ref\|NP_964685.1\| hypothetical protein LJ0830 [Lactobacillus johnsonii NCC 533], gi\|41583...	202.0	[0..20]	[370..42]
gi\|74318686, gi\|... - gi\|74318686\|ref\|YP_316426.1\| phosphoribosylaminoimidazole-succinocarboxamide synthase [Thiobacillus ...	200.0	[0..8]	[356..5]
gi\|88777858, gi\|... - gi\|88799319\|ref\|ZP_01114897.1\| permease, putative [Reinekea sp. MED297], gi\|88777858\|gb\|EAR09055.1\| ...	199.0	[0..15]	[366..9]
gi\|116095557, gi... - gi\|23003675\|ref\|ZP_00047329.1\| hypothetical protein Lgas_03001714 [Lactobacillus gasseri ATCC 33323]... gi\|226819982 - gi\|226819982\|ref\|ZP_03809101.1\| permease [Lactobacillus gasseri MV-22] gi\|238833805, gi... - gi\|238853587\|ref\|ZP_04643957.1\| transport protein [Lactobacillus gasseri 202-4], gi\|238833805\|gb\|EEQ... gi\|23003675 - gi\|23003675\|ref\|ZP_00047329.1\| COG0628: Predicted permease [Lactobacillus gasseri]	196.0	[0..20]	[370..42]
gi\|69151946, gi\|... - gi\|69936923\|ref\|ZP_00631678.1\| Protein of unknown function UPF0118 [Paracoccus denitrificans PD1222]...	196.0	[0..6]	[366..1]
gi\|254557021, gi... - gi\|254557021\|ref\|YP_003063438.1\| transport protein [Lactobacillus plantarum JDM1], gi\|254045948\|gb\|A... gi\|28378815, gi\|... - gi\|28378815\|ref\|NP_785707.1\| transport protein [Lactobacillus plantarum WCFS1], gi\|28271652\|emb\|CAD6...	196.0	[0..2]	[359..3]
gi\|72495222, gi\|... - gi\|73662707\|ref\|YP_301488.1\| putative permease [Staphylococcus saprophyticus subsp. saprophyticus AT...	195.0	[0..8]	[350..37]

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Predicted Domain #1

Region A:
Residues: [1-195]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVNVRQPRDV AQILLSVLFL AIMIVACLWI VQPFILGFAW AGTVVIATWP VLLRLQKIMF  60
   61 GRRSLAVLVM TLLLVMVFII PIALLVNSIV DGSGPLIKAI SSGDMTLPDL AWLNTIPVIG 120
  121 AKLYAGWHNL LDMGGTAIMA KVRPYIGTTT TWFVGQAAHI GRFMVHCALM LLFSALLYWR 180
  181 GEQVAQGIRH FATRL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [196-370]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AGVRGDAAVL LAAQAIRAVA LGVVVTALVQ AVLGGIGLAV SGVPYATLLT VLMILSCLVQ  60
   61 LGPLPVLIPA IIWLYWTGDT TWGTVLLVWS GVVGTLDNVI RPMLIRMGAD LPLILILSGV 120
  121 IGGLIAFGMI GLFIGPVLLA VSWRLFAAWV EEVPPPTDQP EEILEELGEI EKPNK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits