YRC Public Data Repository - Protein Structure Prediction

Protein:	YDIH_ECOLI
Organism:	Escherichia coli
Length:	89 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDIH_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|81245356, gi\|... - gi\|82543945\|ref\|YP_407892.1\| hypothetical protein SBO_1445 [Shigella boydii Sb227], gi\|81245356\|gb\|A... gi\|187427138, gi... - gi\|187730146\|ref\|YP_001880444.1\| hypothetical protein SbBS512_E1886 [Shigella boydii CDC 3083-94], g...	158.0	[0..1]	[89..1]
gi\|73855467, gi\|... - gi\|74311990\|ref\|YP_310409.1\| hypothetical protein SSON_1471 [Shigella sonnei Ss046], gi\|73855467\|gb\|...	158.0	[0..1]	[89..1]
gi\|117623864, gi... - gi\|117623864\|ref\|YP_852777.1\| hypothetical protein APECO1_762 [Escherichia coli APEC O1], gi\|1155129... gi\|91210898, gi\|... - gi\|91210898\|ref\|YP_540884.1\| hypothetical protein UTI89_C1877 [Escherichia coli UTI89], gi\|91072472\|... gi\|218365323, gi... - gi\|218558554\|ref\|YP_002391467.1\| hypothetical protein ECS88_1735 [Escherichia coli S88], gi\|21836532... gi\|218689627, gi... - gi\|218689627\|ref\|YP_002397839.1\| hypothetical protein ECED1_1884 [Escherichia coli ED1a], gi\|2184271... gi\|218432280, gi... - gi\|218705183\|ref\|YP_002412702.1\| hypothetical protein ECUMN_1974 [Escherichia coli UMN026], gi\|21843... gi\|237705631, gi... - gi\|237705631\|ref\|ZP_04536112.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|26247935, gi\|... - gi\|26247935\|ref\|NP_753975.1\| hypothetical protein c2080 [Escherichia coli CFT073], gi\|26108338\|gb\|AA... gi\|75241435 - gi\|75241435\|ref\|ZP_00725286.1\| hypothetical protein EcolF_01001727 [Escherichia coli F11] gi\|227885896, gi... - gi\|227885896\|ref\|ZP_04003701.1\| conserved hypothetical protein [Escherichia coli 83972], gi\|22783707...	157.0	[0..1]	[89..1]
gi\|81241084, gi\|... - gi\|82776936\|ref\|YP_403285.1\| hypothetical protein SDY_1673 [Shigella dysenteriae Sd197], gi\|81241084...	155.0	[0..1]	[89..1]
gi\|75513816, gi\|... - gi\|75513816\|ref\|ZP_00736192.1\| hypothetical protein Ecol5_01002274 [Escherichia coli 53638], gi\|1884...	155.0	[0..1]	[89..1]
lcl\|NC_016856.1_... - [gene=ydiH] [protein=putative cytoplasmic protein] [protein_id=YP_005237235.1] [location=1460003..14... gi\|16419886, gi\|... - gi\|16764717\|ref\|NP_460332.1\| putative cytoplasmic protein [Salmonella typhimurium LT2], gi\|16419886\|... gi\|56413659, gi\|... - gi\|56413659\|ref\|YP_150734.1\| hypothetical protein SPA1488 [Salmonella enterica subsp. enterica serov... gi\|62179957, gi\|... - gi\|62179957\|ref\|YP_216374.1\| hypothetical protein SC1387 [Salmonella enterica subsp. enterica serova... gi\|207857127, gi... - gi\|207857127\|ref\|YP_002243778.1\| hypothetical protein SEN1678 [Salmonella enterica subsp. enterica s... gi\|224468648, gi... - gi\|224584121\|ref\|YP_002637919.1\| hypothetical protein SPC_2362 [Salmonella enterica subsp. enterica ... gi\|197362583, gi... - gi\|197362583\|ref\|YP_002142220.1\| hypothetical protein SSPA1381 [Salmonella enterica subsp. enterica ... gi\|205352913, gi... - gi\|205352913\|ref\|YP_002226714.1\| hypothetical protein SG1750 [Salmonella enterica subsp. enterica se...	118.0	[0..21]	[89..7]
gi\|16502836, gi\|... - gi\|25512479\|pir\|\|AE0703 conserved hypothetical protein STY1756 [imported] - Salmonella enterica subs... gi\|29141699, gi\|... - gi\|29141699\|ref\|NP_805041.1\| hypothetical protein t1235 [Salmonella enterica subsp. enterica serovar... gi\|16760540 - gi\|16760540\|ref\|NP_456157.1\| hypothetical protein STY1756 [Salmonella enterica subsp. enterica serov...	116.0	[0..21]	[89..7]
gi\|124498933, gi... - gi\|124530830\|ref\|ZP_01701335.1\| conserved hypothetical protein [Escherichia coli B], gi\|124498933\|gb... gi\|189356175, gi... - gi\|189402335\|ref\|ZP_02781690.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401... gi\|189403442, gi... - gi\|189403442\|ref\|ZP_02795451.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486... gi\|188014135, gi... - gi\|188025229\|ref\|ZP_02776926.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113... gi\|189000249, gi... - gi\|189010435\|ref\|ZP_02807104.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076... gi\|189405910, gi... - gi\|189405910\|ref\|ZP_02825144.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508]... gi\|190902120, gi... - gi\|191167861\|ref\|ZP_03029666.1\| conserved hypothetical protein [Escherichia coli B7A], gi\|190902120\|... gi\|189367484, gi... - gi\|189404097\|ref\|ZP_02787261.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501... gi\|189370630, gi... - gi\|189405336\|ref\|ZP_02814826.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869]... YDIH_ECO57 - Uncharacterized protein YdiH OS=Escherichia coli O157:H7 GN=ydiH PE=4 SV=2 EG13967 - uncharacterized protein / Function unknown gi\|170520001, gi... - gi\|170682283\|ref\|YP_001743569.1\| hypothetical protein EcSMS35_1511 [Escherichia coli SMS-3-5], gi\|17... gi\|187769498, gi... - gi\|187776041\|ref\|ZP_02800025.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196... YDIH_SHIFL - Uncharacterized protein YdiH OS=Shigella flexneri GN=ydiH PE=4 SV=2 gi\|170019965, gi... - gi\|170019965\|ref\|YP_001724919.1\| hypothetical protein EcolC_1946 [Escherichia coli ATCC 8739], gi\|16... gi\|215486860, gi... - gi\|215486860\|ref\|YP_002329291.1\| hypothetical protein E2348C_1770 [Escherichia coli O127:H6 str. E23... gi\|217318237, gi... - gi\|217328890\|ref\|ZP_03444971.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|208738491, gi... - gi\|208818368\|ref\|ZP_03258688.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|209400116, gi... - gi\|209400116\|ref\|YP_002270754.1\| hypothetical protein ECH74115_2400 [Escherichia coli O157:H7 str. E... sp\|P64476\|YDIH_ECOLI - Uncharacterized protein ydiH OS=Escherichia coli (strain K12) GN=ydiH PE=4 SV=2 gi\|193068978, gi... - gi\|193068978\|ref\|ZP_03049937.1\| conserved hypothetical protein [Escherichia coli E110019], gi\|192957... gi\|194429492, gi... - gi\|194429492\|ref\|ZP_03062014.1\| conserved hypothetical protein [Escherichia coli B171], gi\|194412456... gi\|191171691, gi... - gi\|191171691\|ref\|ZP_03033238.1\| conserved hypothetical protein [Escherichia coli F11], gi\|190908021\|... gi\|193065310, gi... - gi\|193065310\|ref\|ZP_03046382.1\| conserved hypothetical protein [Escherichia coli E22], gi\|192927104\|... gi\|208810424, gi... - gi\|208810424\|ref\|ZP_03252300.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|208816761, gi... - gi\|208816761\|ref\|ZP_03257881.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|194416967, gi... - gi\|194434798\|ref\|ZP_03067048.1\| conserved hypothetical protein [Shigella dysenteriae 1012], gi\|19441... gi\|194422538, gi... - gi\|194438528\|ref\|ZP_03070617.1\| conserved hypothetical protein [Escherichia coli 101-1], gi\|19442253... gi\|75177419 - gi\|75177419\|ref\|ZP_00697508.1\| hypothetical protein SboyB_01002770 [Shigella boydii BS512] gi\|110641806, gi... - gi\|110641806\|ref\|YP_669536.1\| hypothetical protein ECP_1632 [Escherichia coli 536], gi\|110343398\|gb\|... gi\|254793302, gi... - gi\|254793302\|ref\|YP_003078139.1\| hypothetical protein ECSP_2252 [Escherichia coli O157:H7 str. TW143... EG13967 - uncharacterized protein / Function unknown	109.0	[0..28]	[89..1]
gi\|36786231, gi\|... - gi\|37526799\|ref\|NP_930143.1\| hypothetical protein plu2909 [Photorhabdus luminescens subsp. laumondii...	108.0	[0..10]	[85..7]

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Predicted Domain #1

Region A:
Residues: [1-89]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTHIAFGHYL HSKRWYTVQV LSKSEDAMST QLDPTQLAIE FLRRDQSNLS PAQYLKRLKQ  60
   61 LELEFADLLT LSSAELKEEI YFAWRLGVH

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits