YRC Public Data Repository - Protein Structure Prediction

Protein:	YDHY_CITFR
Organism:	Citrobacter freundii
Length:	142 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDHY_CITFR.

Description	E-value	Query Range	Subject Range
gi\|71278801, gi\|... - gi\|71278801\|ref\|YP_271532.1\| putative glcG protein [Colwellia psychrerythraea 34H], gi\|71144541\|gb\|A...	154.0	[0..4]	[141..1]
gi\|31324725 - gi\|31324725\|gb\|AAP48648.1\| DhaG [uncultured bacterium]	153.0	[0..1]	[142..1]
gi\|60099612\|gb\|A... - putative adenosyl transferase subunit [Escherichia blattae] gi\|60099612 - gi\|60099612\|gb\|AAX12916.1\| putative adenosyl transferase subunit [Escherichia blattae]	153.0	[0..1]	[141..1]
gi\|150018877, gi... - gi\|82744675\|ref\|ZP_00907190.1\| conserved hypothetical protein [Clostridium beijerincki NCIMB 8052], ...	151.0	[0..4]	[136..17]
gi\|6048993 - gi\|6048993\|gb\|AAF02431.1\|AF112137_4 unknown [Burkholderia sp. RP007]	148.0	[0..3]	[139..8]
gi\|134132491, gi... - gi\|67549277\|ref\|ZP_00427146.1\| Protein of unknown function DUF336 [Burkholderia vietnamiensis G4], g...	146.0	[0..4]	[139..9]
gi\|94310265, gi\|... - gi\|94310265\|ref\|YP_583475.1\| hypothetical protein Rmet_1323 [Ralstonia metallidurans CH34], gi\|93354...	146.0	[0..4]	[139..9]
gi\|87122814, gi\|... - gi\|87122814\|ref\|ZP_01078686.1\| putative glcG protein [Marinomonas sp. MED121], gi\|86161920\|gb\|EAQ632...	146.0	[0..4]	[141..1]
gi\|13814423, gi\|... - gi\|15898076\|ref\|NP_342681.1\| hypothetical protein SSO1224 [Sulfolobus solfataricus P2], gi\|13814423\|... gi\|25363137, gi\|... - pir\|\|H90276 conserved hypothetical protein [imported] - Sulfolobus solfataricus, gi\|145203155\|gb\|ABP...	146.0	[0..10]	[141..9]

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Predicted Domain #1

Region A:
Residues: [1-142]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKSQQIATI TLAAAKKMAQ AVEAKALEIN VPVVFSVVDH GGNTLLMQRM DDAFVTSCDI  60
   61 SLNKAYTACC LRQGTHEITD AVQPGASLYG LQLTNQQRIV IFGGGLPVIL NGKVIGAVGV 120
  121 SGGTVEQDRL LAETALDCFS EL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.522879
Match:	2a2lA
Description:	Crystal structure of Klebsiella pneumoniae hypothetical protein ORFY, New York Structural Genomics Consortium
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits