YRC Public Data Repository - Protein Structure Prediction

Protein:	YDHS_ECOLI
Organism:	Escherichia coli
Length:	534 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDHS_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|13361842, gi\|... - gi\|15831629\|ref\|NP_310402.1\| hypothetical protein ECs2375 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|13361842, gi\|... - gi\|15831629\|ref\|NP_310402.1\| hypothetical protein ECs2375 [Escherichia coli O157:H7], gi\|13361842\|db... gi\|209769298, gi... - pir\|\|C85774 hypothetical protein Z2695 [imported] - Escherichia coli (strain O157:H7, substrain EDL... gi\|168802693, gi... - gi\|189375375\|gb\|EDU93791.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|15802080, gi\|... - gi\|15802080\|ref\|NP_288102.1\| hypothetical protein Z2695 [Escherichia coli O157:H7 EDL933], gi\|125156... gi\|168790494, gi... - gi\|189370039\|gb\|EDU88455.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|217328840, gi... - gi\|217328840\|ref\|ZP_03444921.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458...	288.0	[0..1]	[534..1]
gi\|74312007, gi\|... - gi\|74312007\|ref\|YP_310426.1\| hypothetical protein SSON_1488 [Shigella sonnei Ss046], gi\|73855484\|gb\|...	288.0	[0..1]	[534..1]
gi\|81245375, gi\|... - gi\|82543964\|ref\|YP_407911.1\| hypothetical protein SBO_1464 [Shigella boydii Sb227], gi\|81245375\|gb\|A...	287.0	[0..1]	[534..1]
gi\|209918981, gi... - gi\|209918981\|ref\|YP_002293065.1\| hypothetical protein ECSE_1790 [Escherichia coli SE11], gi\|20991224... gi\|218361002, gi... - gi\|218554234\|ref\|YP_002387147.1\| hypothetical protein ECIAI1_1719 [Escherichia coli IAI1], gi\|218361... gi\|218351961, gi... - gi\|218695229\|ref\|YP_002402896.1\| hypothetical protein EC55989_1835 [Escherichia coli 55989], gi\|2183... gi\|193064969, gi... - gi\|75257085\|ref\|ZP_00728645.1\| COG4529: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|191165952, gi... - gi\|75230886\|ref\|ZP_00717335.1\| COG4529: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|192955086, gi... - gi\|75214850\|ref\|ZP_00713333.1\| COG4529: Uncharacterized protein conserved in bacteria [Escherichia c...	287.0	[0..1]	[534..1]
gi\|188492055, gi... - gi\|75512900\|ref\|ZP_00735381.1\| COG4529: Uncharacterized protein conserved in bacteria [Escherichia c...	286.0	[0..1]	[534..1]
gi\|218365306, gi... - gi\|218558537\|ref\|YP_002391450.1\| hypothetical protein ECS88_1716 [Escherichia coli S88], gi\|21836530... gi\|226900371, gi... - gi\|237705614\|ref\|ZP_04536095.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|91210881, gi\|... - gi\|91210881\|ref\|YP_540867.1\| hypothetical protein UTI89_C1860 [Escherichia coli UTI89], gi\|91072455\|...	286.0	[0..1]	[534..1]
gi\|110805644, gi... - gi\|110805644\|ref\|YP_689164.1\| hypothetical protein SFV_1690 [Shigella flexneri 5 str. 8401], gi\|1106...	286.0	[0..1]	[534..1]
gi\|157066813, gi... - gi\|75195745\|ref\|ZP_00705815.1\| COG4529: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|170019982, gi... - gi\|170019982\|ref\|YP_001724936.1\| hypothetical protein EcolC_1963 [Escherichia coli ATCC 8739], gi\|16... gi\|124498458, gi... - gi\|124531603\|ref\|ZP_01701814.1\| conserved hypothetical protein [Escherichia coli B], gi\|124498458\|gb...	285.0	[0..1]	[534..1]
gi\|26247915, gi\|... - gi\|26247915\|ref\|NP_753955.1\| hypothetical protein c2060 [Escherichia coli CFT073], gi\|26108318\|gb\|AA... gi\|227885916, gi... - gi\|227885916\|ref\|ZP_04003721.1\| conserved hypothetical protein [Escherichia coli 83972], gi\|22783709...	283.0	[0..1]	[534..1]
gi\|110343381, gi... - gi\|110641789\|ref\|YP_669519.1\| hypothetical protein ECP_1615 [Escherichia coli 536], gi\|110343381\|gb\|... gi\|190906267, gi... - gi\|75238774\|ref\|ZP_00722758.1\| COG4529: Uncharacterized protein conserved in bacteria [Escherichia c...	283.0	[0..1]	[534..1]

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Predicted Domain #1

Region A:
Residues: [1-534]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKIAIVGAG PTGIYTLFSL LQQQTPLSIS IFEQADEAGV GMPYSDEENS KMMLANIASI  60
   61 EIPPIYCTYL EWLQKQEDSH LQRYGVKKET LHDRQFLPRI LLGEYFRDQF LRLVDQARQQ 120
  121 KFAVAVYESC QVTDLQITNA GVMLATNQDL PSETFDLAVI ATGHVWPDEE EATRTYFPSP 180
  181 WSGLMEAKVD ACNVGIMGTS LSGLDAAMAV AIQHGSFIED DKQHVVFHRD NASEKLNITL 240
  241 LSRTGILPEA DFYCPIPYEP LHIVTDQALN AEIQKGEEGL LDRVFRLIVE EIKFADPDWS 300
  301 QRIALESLNV DSFAQAWFAE RKQRDPFDWA EKNLQEVERN KREKHTVPWR YVILRLHEAV 360
  361 QEIVPHLNEH DHKRFSKGLA RVFIDNYAAI PSESIRRLLA LREAGIIHIL ALGEDYKMEI 420
  421 NESRTVLKTE DNSYSFDVFI DARGQRPLKV KDIPFPGLRE QLQKTGDEIP DVGEDYTLQQ 480
  481 PEDIRGRVAF GALPWLMHDQ PFVQGLTACA EIGEAMARAV VKPASRARRR LSFD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	48.221849
Match:	1w4xA
Description:	Phenylacetone Monooxygenase, a Baeyer-Villiger Monooxygenase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.03768022092949	bayes_pls_golite062009
oxidoreductase activity	0.78682363509228	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: