YRC Public Data Repository - Protein Structure Prediction

Protein:	YDGT_ECOLI, HNSB...
Organism:	Escherichia coli
Length:	71 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDGT_ECOLI, HNSB....

Description	E-value	Query Range	Subject Range
gi\|224584030, gi... - gi\|224584030\|ref\|YP_002637828.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica s... gi\|161363484, gi... - gi\|161614120\|ref\|YP_001588085.1\| oriC-binding nucleoid-associated protein [Salmonella enterica subsp... gi\|62127682, gi\|... - gi\|62180049\|ref\|YP_216466.1\| oriC-binding nucleoid-associated protein [Salmonella enterica subsp. en...	119.0	[0..1]	[71..24]
CNU_SALCH - OriC-binding nucleoid-associated protein OS=Salmonella choleraesuis (strain SC-B67) GN=cnu PE=3 SV=2 CNU_SALTY - OriC-binding nucleoid-associated protein OS=Salmonella typhimurium GN=cnu PE=3 SV=1 CNU_SALCH - OriC-binding nucleoid-associated protein OS=Salmonella choleraesuis GN=cnu PE=3 SV=2 HNSB2_SALPA, CNU... - H-NS/stpA-binding protein 2 - Salmonella paratyphi-a, OriC-binding nucleoid-associated protein OS=Sa... gi\|29141788, gi\|... - gi\|29141788\|ref\|NP_805130.1\| oriC-binding nucleoid-associated protein [Salmonella enterica subsp. en... HNSB2_SALTI, CNU... - H-NS/stpA-binding protein 2 - Salmonella typhi, OriC-binding nucleoid-associated protein OS=Salmonel... CNU_SALPA - OriC-binding nucleoid-associated protein OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=cn... gi\|16760452 - gi\|16760452\|ref\|NP_456069.1\| oriC-binding nucleoid-associated protein [Salmonella enterica subsp. en... HNSB2_SALTY, CNU... - H-NS/stpA-binding protein 2 - Salmonella typhimurium, OriC-binding nucleoid-associated protein OS=Sa... CNU_SALTI - OriC-binding nucleoid-associated protein OS=Salmonella typhi GN=cnu PE=3 SV=1 CNU_SALTY - OriC-binding nucleoid-associated protein OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700... gi\|194445185, gi... - gi\|194445185\|ref\|YP_002040710.1\| hypothetical protein SNSL254_A1571 [Salmonella enterica subsp. ente... gi\|194407423, gi... - gi\|194449119\|ref\|YP_002045499.1\| oriC-binding nucleoid-associated protein [Salmonella enterica subsp... gi\|194471156, gi... - gi\|194471156\|ref\|ZP_03077140.1\| conserved domain protein [Salmonella enterica subsp. enterica serova... gi\|194735660, gi... - gi\|194735660\|ref\|YP_002114474.1\| hypothetical protein SeSA_A1559 [Salmonella enterica subsp. enteric... gi\|205339634, gi... - gi\|205339634\|gb\|EDZ26398.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar He... gi\|205346957, gi... - gi\|205346957\|gb\|EDZ33588.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar Ha... gi\|168463127, gi... - gi\|195633885\|gb\|EDX52237.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar Ne... gi\|205343876, gi... - gi\|205343876\|gb\|EDZ30640.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar We... CNU_SALCH - OriC-binding nucleoid-associated protein OS=Salmonella choleraesuis GN=cnu PE=3 SV=2 gi\|205323530, gi... - gi\|205323530\|gb\|EDZ11369.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar Sa... gi\|167994292, gi... - gi\|205327817\|gb\|EDZ14581.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar 4,... gi\|205335232, gi... - gi\|205335232\|gb\|EDZ21996.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar Ke... gi\|168235534, gi... - gi\|197291040\|gb\|EDY30393.1\| conserved domain protein [Salmonella enterica subsp. enterica serovar Sc... gi\|213977362 - gi\|213977362\|ref\|ZP_03404621.1\| oriC-binding nucleoid-associated protein [Salmonella enterica subsp.... gi\|214000270 - gi\|214000270\|ref\|ZP_03411005.1\| oriC-binding nucleoid-associated protein [Salmonella enterica subsp.... gi\|213425977 - gi\|213425977\|ref\|ZP_03358727.1\| oriC-binding nucleoid-associated protein [Salmonella enterica subsp.... gi\|213582831 - gi\|213582831\|ref\|ZP_03364657.1\| oriC-binding nucleoid-associated protein [Salmonella enterica subsp.... gi\|213649164 - gi\|213649164\|ref\|ZP_03379217.1\| oriC-binding nucleoid-associated protein [Salmonella enterica subsp.... gi\|213855033 - gi\|213855033\|ref\|ZP_03383273.1\| oriC-binding nucleoid-associated protein [Salmonella enterica subsp.... gi\|200389771, gi... - gi\|200389771\|ref\|ZP_03216382.1\| conserved domain protein [Salmonella enterica subsp. enterica serova... gi\|213028493 - gi\|213028493\|ref\|ZP_03342940.1\| oriC-binding nucleoid-associated protein [Salmonella enterica subsp.... gi\|213051625 - gi\|213051625\|ref\|ZP_03344503.1\| oriC-binding nucleoid-associated protein [Salmonella enterica subsp.... gi\|213418461 - gi\|213418461\|ref\|ZP_03351527.1\| oriC-binding nucleoid-associated protein [Salmonella enterica subsp.... gi\|197247598, gi... - gi\|197247598\|ref\|YP_002146584.1\| hypothetical protein SeAg_B1713 [Salmonella enterica subsp. enteric... gi\|238911693 - gi\|238911693\|ref\|ZP_04655530.1\| oriC-binding nucleoid-associated protein [Salmonella enterica subsp.... gi\|197240296, gi... - gi\|197262041\|ref\|ZP_03162115.1\| conserved domain protein [Salmonella enterica subsp. enterica serova... gi\|197362494, gi... - gi\|197362494\|ref\|YP_002142131.1\| oriC-binding nucleoid-associated protein [Salmonella enterica subsp... gi\|198244975, gi... - gi\|198244975\|ref\|YP_002215674.1\| hypothetical protein SeD_A1881 [Salmonella enterica subsp. enterica...	116.0	[0..1]	[71..1]
lcl\|NC_016856.1_... - [gene=ydgT] [protein=oriC-binding nucleoid-associated protein] [protein_id=YP_005237332.1] [location... gi\|39546317 - gi\|39546317\|ref\|NP_460424.2\| oriC-binding nucleoid-associated protein [Salmonella typhimurium LT2] gi\|206708838, gi... - gi\|207857035\|ref\|YP_002243686.1\| oriC-binding nucleoid-associated protein [Salmonella enterica subsp... gi\|205272607, gi... - gi\|205352826\|ref\|YP_002226627.1\| oriC-binding nucleoid-associated protein [Salmonella enterica subsp...	116.0	[0..1]	[71..6]
gi\|47154986 - gi\|47154986\|emb\|CAE85185.1\| hypothetical protein [Escherichia coli] gi\|190907823, gi... - gi\|191171788\|ref\|ZP_03033334.1\| haemolysin expression modulating protein [Escherichia coli F11], gi\|... gi\|110344744, gi... - gi\|110643152\|ref\|YP_670882.1\| putative hemolysin expression modulating protein [Escherichia coli 536...	114.0	[0..2]	[70..63]
gi\|85059434, gi\|... - gi\|85059434\|ref\|YP_455136.1\| oriC-binding nucleoid-associated protein [Sodalis glossinidius str. 'mo...	111.0	[0..1]	[70..1]
gi\|9971679, gi\|1... - gi\|9971679\|dbj\|BAB12630.1\| ydfA [Escherichia coli], gi\|10955485\|ref\|NP_065337.1\| transcriptional reg...	110.0	[0..2]	[70..10]
gi\|75241217 - gi\|75241217\|ref\|ZP_00725079.1\| hypothetical protein EcolF_01001780 [Escherichia coli F11]	105.0	[0..2]	[70..5]
gi\|253782325, gi... - gi\|253990875\|ref\|YP_003042231.1\| Haemolysin expression modulating protein [Photorhabdus asymbiotica]... gi\|36787149, gi\|... - gi\|37527713\|ref\|NP_931058.1\| hemolysin expression-modulating protein [Photorhabdus luminescens subsp...	105.0	[0..1]	[71..1]
gi\|117622719, gi... - gi\|117622719\|ref\|YP_851632.1\| Hha protein [Escherichia coli APEC O1], gi\|115511843\|gb\|ABI99917.1\| Hh...	105.0	[0..1]	[71..73]

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Predicted Domain #1

Region A:
Residues: [1-71]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVQDYLLKF RKISSLESLE KLYDHLNYTL TDDQELINMY RAADHRRAEL VSGGRLFDLG  60
   61 QVPKSVWHYV Q

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.522879
Match:	1jw2A
Description:	Hemolysin expression modulating protein HHA
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits