YRC Public Data Repository - Protein Structure Prediction

Protein:	YDGE_ECOLI, MDTI...
Organism:	Escherichia coli
Length:	109 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDGE_ECOLI, MDTI....

Description	E-value	Query Range	Subject Range
gi\|146401676, gi... - gi\|88941787\|ref\|ZP_01147187.1\| Membrane transporters of cations and cationic drugs-like [Acidiphiliu...	132.0	[0..8]	[109..184]
gi\|287840 - gi\|287840\|emb\|CAA49570.1\| SugEL [Escherichia coli]	130.0	[0..7]	[109..74]
gi\|84180564 - gi\|84180564\|gb\|ABC54729.1\| ORF3/QacEdelta1 fusion protein [Vibrio cholerae] gi\|148615590 - gi\|148615590\|gb\|ABQ96632.1\| Orf3/QacEdelta1 fusion protein [Salmonella enterica subsp. enterica sero... gi\|20086228 - gi\|20086228\|gb\|AAM03346.1\| ORF3-QacEdelta1 fusion protein [Proteus mirabilis] gi\|118511776 - gi\|118511776\|emb\|CAD20940.2\| ORF3-QacE (3'CS2) fusion protein [Salmonella enterica subsp. enterica s... gi\|74055072 - gi\|74055072\|gb\|AAZ95873.1\| ORF3-QacEdelta1 fusion protein [Escherichia coli]	125.0	[0..8]	[105..217]
gi\|67533793, gi\|... - gi\|67545038\|ref\|ZP_00422963.1\| Small multidrug resistance protein [Burkholderia vietnamiensis G4], g...	122.0	[0..7]	[109..90]
gi\|15834383, gi\|... - gi\|15834383\|ref\|NP_313156.1\| suppressor of groEL [Escherichia coli O157:H7], gi\|13364606\|dbj\|BAB3855... gi\|209750462, gi... - pir\|\|A86111 suppresses groEL, may be chaperone [imported] - Escherichia coli (strain O157:H7, substr... gi\|12519132, gi\|... - gi\|15804742\|ref\|NP_290783.1\| suppresses groEL, may be chaperone [Escherichia coli O157:H7 EDL933], g... gi\|15834383, gi\|... - gi\|15834383\|ref\|NP_313156.1\| suppressor of groEL [Escherichia coli O157:H7 str. Sakai], gi\|13364606\|...	121.0	[0..7]	[109..51]
gi\|26251044, gi\|... - gi\|26251044\|ref\|NP_757084.1\| SugE protein [Escherichia coli CFT073], gi\|26111476\|gb\|AAN83658.1\|AE016...	120.0	[0..7]	[109..51]
gi\|82779421, gi\|... - gi\|82779421\|ref\|YP_405770.1\| SugE [Shigella dysenteriae Sd197], gi\|81243569\|gb\|ABB64279.1\| SugE [Shi...	120.0	[0..7]	[109..51]
gi\|82546606, gi\|... - gi\|82546606\|ref\|YP_410553.1\| SugE [Shigella boydii Sb227], gi\|81248017\|gb\|ABB68725.1\| SugE [Shigella... gi\|209750458, gi... - gi\|209750464\|gb\|ACI73539.1\| suppressor of groEL [Escherichia coli], gi\|209750458\|gb\|ACI73536.1\| supp... gi\|226840270, gi... - gi\|254037164\|ref\|ZP_04871241.1\| SugEL [Escherichia sp. 1_1_43], gi\|226840270\|gb\|EEH72272.1\| SugEL [E...	120.0	[0..7]	[109..51]
gi\|27352305, gi\|... - gi\|27379155\|ref\|NP_770684.1\| molecular chaperone [Bradyrhizobium japonicum USDA 110], gi\|27352305\|db...	119.0	[0..1]	[108..40]

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Predicted Domain #1

Region A:
Residues: [1-109]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQFEWVHAA WLALAIVLEI VANVFLKFSD GFRRKIFGLL SLAAVLAAFS ALSQAVKGID  60
   61 LSVAYALWGG FGIAATLAAG WILFGQRLNR KGWIGLVLLL AGMIMVKLA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.69897
Match:	2i68A
Description:	No description for 2i68A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits