YRC Public Data Repository - Protein Structure Prediction

Protein:	YDGD_ECOLI
Organism:	Escherichia coli
Length:	273 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDGD_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|68397214 - gi\|68397214\|ref\|XP_696037.1\| PREDICTED: similar to suppression of tumorigenicity 14 [Danio rerio]	217.0	[0..17]	[271..588]
KLKB1_MOUSE, KAL... - Plasma kallikrein OS=Mus musculus GN=Klkb1 PE=1 SV=1, (P26262) Plasma kallikrein precursor (EC 3.4.2...	217.0	[0..17]	[272..374]
gi\|109482418 - gi\|109482418\|ref\|XP_001074604.1\| PREDICTED: similar to Transmembrane protease, serine 6 (Matriptase-...	216.0	[0..21]	[271..549]

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Predicted Domain #1

Region A:
Residues: [1-273]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTTIAVVLG AISLTSAFVF ADKPDVARSA NDEVSTLFFG HDDRVPVNDT TQSPWDAVGQ  60
   61 LETASGNLCT ATLIAPNLAL TAGHCLLTPP KGKADKAVAL RFVSNKGLWR YEIHDIEGRV 120
  121 DPTLGKRLKA DGDGWIVPPA AAPWDFGLIV LRNPPSGITP LPLFEGDKAA LTAALKAAGR 180
  181 KVTQAGYPED HLDTLYSHQN CEVTGWAQTS VMSHQCDTLP GDSGSPLMLH TDDGWQLIGV 240
  241 QSSAPAAKDR WRADNRAISV TGFRDKLDQL SQK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	51.69897
Match:	2f83A
Description:	No description for 2f83A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits