YRC Public Data Repository - Protein Structure Prediction

Protein:	YDFR_ECOLI
Organism:	Escherichia coli
Length:	103 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDFR_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|83587904, gi\|... - gi\|83587904\|ref\|ZP_00926530.1\| hypothetical protein Ecol1_01000935 [Escherichia coli 101-1], gi\|1944...	183.0	[0..1]	[103..1]
gi\|75227483, gi\|... - gi\|75227483\|ref\|ZP_00714248.1\| hypothetical protein EcolB7_01004097 [Escherichia coli B7A], gi\|19116...	182.0	[0..1]	[103..1]
gi\|83569536, gi\|... - gi\|83569536\|ref\|ZP_00920988.1\| hypothetical protein Sdys1_01002192 [Shigella dysenteriae 1012], gi\|1...	174.0	[0..1]	[93..1]
gi\|74312379, gi\|... - gi\|74312379\|ref\|YP_310798.1\| hypothetical protein SSON_1892 [Shigella sonnei Ss046], gi\|73855856\|gb\|... gi\|75179126, gi\|... - gi\|75179126\|ref\|ZP_00699144.1\| hypothetical protein SboyB_01000921 [Shigella boydii BS512], gi\|18773...	173.0	[0..1]	[93..1]
gi\|30040024, gi\|... - gi\|30061782\|ref\|NP_835953.1\| hypothetical protein S0230 [Shigella flexneri 2a str. 2457T], gi\|300400...	173.0	[0..1]	[93..1]
gi\|194411908, gi... - gi\|75208720\|ref\|ZP_00709014.1\| hypothetical protein EcolB_01004091 [Escherichia coli B171], gi\|19443...	166.0	[0..1]	[93..1]
gi\|91072085, gi\|... - gi\|91210511\|ref\|YP_540497.1\| hypothetical protein UTI89_C1488 [Escherichia coli UTI89], gi\|91072085\|... gi\|117623490, gi... - gi\|117623490\|ref\|YP_852403.1\| hypothetical protein APECO1_390 [Escherichia coli APEC O1], gi\|1155126... gi\|226900008, gi... - gi\|237705251\|ref\|ZP_04535732.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690...	160.0	[0..1]	[83..1]
gi\|75254964, gi\|... - gi\|75254964\|ref\|ZP_00726905.1\| hypothetical protein EcolE2_01004859 [Escherichia coli E22], gi\|19306... gi\|75176935, gi\|... - gi\|75176935\|ref\|ZP_00697042.1\| hypothetical protein SboyB_01002953 [Shigella boydii BS512], gi\|18773...	159.0	[0..1]	[83..1]
gi\|115513260, gi... - gi\|117624136\|ref\|YP_853049.1\| hypothetical protein APECO1_1030 [Escherichia coli APEC O1], gi\|115513...	159.0	[0..1]	[83..1]

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Predicted Domain #1

Region A:
Residues: [1-103]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQDYELVVK GVRNFENKVT VTVALQDKER FDGEIFDLDV AMDRVEGAAL EFYEAAARRS  60
   61 VRQVFLEVAE KLSEKVESYL QHQYSFKIEN PANKHERPHH KYL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	34.119186
Match:	PF07041.2
Description:	No description for PF07041.2 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.896	N/A	N/A	a.23.1	HSC20 (HSCB), C-terminal oligomerisation domain
View	Download	0.891	N/A	N/A	a.23.1	HSC20 (HSCB), C-terminal oligomerisation domain
View	Download	0.818	N/A	N/A	d.19.1	MHC antigen-recognition domain
View	Download	0.799	N/A	N/A	a.47.2	t-snare proteins
View	Download	0.768	N/A	N/A	a.7.1	Spectrin repeat
View	Download	0.764	N/A	N/A	a.47.2	t-snare proteins
View	Download	0.744	N/A	N/A	a.47.1	STAT
View	Download	0.731	N/A	N/A	a.23.1	HSC20 (HSCB), C-terminal oligomerisation domain
View	Download	0.715	N/A	N/A	a.2.6	Effector domain of the protein kinase pkn/prk1
View	Download	0.712	N/A	N/A	a.7.1	Spectrin repeat

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits