YRC Public Data Repository - Protein Structure Prediction

Protein:	YDFK_ECOLI
Organism:	Escherichia coli
Length:	88 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDFK_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|238900604, gi... - gi\|238900604\|ref\|YP_002926400.1\| Rac prophage; putative DNA-binding transcriptional regulator [Esche... gi\|16129336\|ref\|... - Rac prophage; predicted DNA-binding transcriptional regulator [Escherichia coli K12], Rac prophage; ... gi\|85674931, gi\|... - gi\|89108221\|ref\|AP_002001.1\| predicted DNA-binding transcriptional regulator [Escherichia coli str. ... gi\|170081052, gi... - gi\|170081052\|ref\|YP_001730372.1\| Rac prophage; DNA-binding transcriptional regulator [Escherichia co... YNAE_ECOLI - Hypothetical protein ynaE - Escherichia coli gi\|16129336, gi\|... - gi\|1787639\|gb\|AAC74457.1\| Rac prophage; predicted DNA-binding transcriptional regulator [Escherichia...	155.0	[0..1]	[88..1]
gi\|115515856, gi... - gi\|117626732\|ref\|YP_860055.1\| hypothetical protein APECO1_2007 [Escherichia coli APEC O1], gi\|115515... gi\|218368372, gi... - gi\|218561603\|ref\|YP_002394516.1\| conserved hypothetical protein; putative DNA-binding transcriptiona...	153.0	[0..1]	[88..1]
gi\|26109393, gi\|... - gi\|26248987\|ref\|NP_755027.1\| hypothetical protein c3145 [Escherichia coli CFT073], gi\|26109393\|gb\|AA... gi\|218551674, gi... - gi\|218551674\|ref\|YP_002385466.1\| conserved hypothetical protein; putative DNA-binding transcriptiona...	151.0	[0..1]	[88..1]

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Predicted Domain #1

Region A:
Residues: [1-88]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKINNILRNI FMKSKDTLKW FPAQLPEVRI ILGDAVVEVA KQGRPINTRT LLDYIEGNIK  60
   61 KKSWLDNKEL LQTAISVLKD NQNLNGKM

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.773	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.773	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.755	a.74.1	Cyclin-like
View	Download	0.755	a.74.1	Cyclin-like
View	Download	0.741	a.61.1	Retroviral matrix proteins
View	Download	0.722	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.722	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.717	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.717	a.4.5	"Winged helix" DNA-binding domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits