YRC Public Data Repository - Protein Structure Prediction

Protein:	YDDO_ECOLI
Organism:	Escherichia coli
Length:	308 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDDO_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|23099907, gi\|... - gi\|23099907\|ref\|NP_693373.1\| oligopeptide ABC transporter ATP-binding protein [Oceanobacillus iheyen...	406.0	[0..2]	[305..5]
gi\|25297027 - pir\|\|E84105 oligopeptide ABC transporter (ATP-binding protein) BH3645 [imported] - Bacillus halodura... gi\|15616207, gi\|... - gi\|15616207\|ref\|NP_244512.1\| oligopeptide ABC transporter ATP-binding protein [Bacillus halodurans C...	406.0	[0..1]	[305..1]
gi\|56964180, gi\|... - gi\|56964180\|ref\|YP_175911.1\| oligopeptide ABC transporter ATP-binding protein [Bacillus clausii KSM-...	406.0	[0..1]	[305..1]
gi\|89158826, gi\|... - gi\|89211579\|ref\|ZP_01189937.1\| Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-termin...	405.0	[0..1]	[305..1]
gi\|89100170, gi\|... - gi\|89100170\|ref\|ZP_01173038.1\| oligopeptide ABC transporter ATP-binding protein [Bacillus sp. NRRL B...	403.0	[0..1]	[305..9]
gi\|20808880, gi\|... - gi\|20808880\|ref\|NP_624051.1\| ABC-type dipeptide/oligopeptide/nickel transport system, ATPase compone... gi\|20808880 - gi\|20808880\|ref\|NP_624051.1\| ABC-type dipeptide/oligopeptide/nickel transport system, ATPase compone...	401.0	[0..1]	[305..1]
gi\|110620066, gi... - gi\|147921514\|ref\|YP_684670.1\| putative ABC-type peptide transport system, ATPase component 2 [uncult...	400.0	[0..1]	[305..1]
gi\|75760154, gi\|... - gi\|75760154\|ref\|ZP_00740213.1\| Oligopeptide transport ATP-binding protein oppF [Bacillus thuringiens...	399.0	[0..1]	[306..1]

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Predicted Domain #1

Region A:
Residues: [1-308]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDTLLTLRD VHINFPARKN WLGKTTEHVH AINGIDLQIR RGETLGIVGE SGCGKSTLAQ  60
   61 LLMGMLQPSH GQYIRSGSQR IMQMVFQDPL SSLNPRLPVW RIITEPLWIA KRSSEQQRRA 120
  121 LAEELAVQVG IRPEYLDRLP HAFSGGQRQR IAIARALSSQ PDVIVLDEPT SALDISVQAQ 180
  181 ILNLLVTLQE NHGLTYVLIS HNVSVIRHMS DRVAVMYLGQ IVELGDAQQV LTAPAHPYTR 240
  241 LLLDSLPAID KPLEEEWALR KTDLPGNRTL PQGCFFYERC PLATHGCEVR QSLAIREDGR 300
  301 ELRCWRAL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	69.045757
Match:	1z47A
Description:	Structure of the ATPase subunit CysA of the putative sulfate ATP-binding cassette (ABC) transporter from Alicyclobacillus acidocaldarius
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits