YRC Public Data Repository - Protein Structure Prediction

Protein:	YDCT_ECOLI
Organism:	Escherichia coli
Length:	337 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDCT_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|13475457, gi\|... - gi\|14026209\|dbj\|BAB52807.1\| ABC transporter, polyamine transport protein, ATP-binding protein [Mesor...	370.0	[0..2]	[334..20]
gi\|45914913, gi\|... - gi\|69278904\|ref\|ZP_00613912.1\| Spermidine/putrescine ABC transporter ATP-binding subunit [Mesorhizob...	370.0	[0..2]	[335..20]
gi\|209918714, gi... - gi\|209918714\|ref\|YP_002292798.1\| putative ABC transporter ATP-binding component [Escherichia coli SE... gi\|218351714, gi... - gi\|218694982\|ref\|YP_002402649.1\| putative spermidine/putrescine transporter subunit ; ATP-binding co... gi\|74312204, gi\|... - gi\|74312204\|ref\|YP_310623.1\| putative ATP-binding component of a transport system [Shigella sonnei S... gi\|157077737, gi... - gi\|75190489\|ref\|ZP_00703756.1\| COG3842: ABC-type spermidine/putrescine transport systems, ATPase com...	368.0	[0..1]	[337..1]
gi\|4980927, gi\|1... - gi\|4980927\|gb\|AAD35506.1\|AE001721_5 sugar ABC transporter, ATP-binding protein [Thermotoga maritima ... gi\|7442604, gi\|1... - pir\|\|E72378 sugar ABC transporter, ATP-binding protein - Thermotoga maritima (strain MSB8), gi\|16028...	368.0	[0..3]	[336..2]
gi\|110641621, gi... - gi\|110641621\|ref\|YP_669351.1\| ABC transporter ATP-binding protein [Escherichia coli 536], gi\|1103432... gi\|190906848, gi... - gi\|75240206\|ref\|ZP_00724158.1\| COG3842: ABC-type spermidine/putrescine transport systems, ATPase com... gi\|215264748, gi... - gi\|215486676\|ref\|YP_002329107.1\| predicted spermidine/putrescine transporter subunit, membrane compo... gi\|218426933, gi... - gi\|218689369\|ref\|YP_002397581.1\| putative spermidine/putrescine transporter subunit ; ATP-binding co...	368.0	[0..1]	[337..1]
gi\|237705420, gi... - gi\|237705420\|ref\|ZP_04535901.1\| ABC transporter ATP-binding protein [Escherichia sp. 3_2_53FAA], gi\|... gi\|115512808, gi... - gi\|117623684\|ref\|YP_852597.1\| ABC transporter ATP-binding protein [Escherichia coli APEC O1], gi\|115... gi\|91210683, gi\|... - gi\|91210683\|ref\|YP_540669.1\| ABC transporter ATP-binding protein [Escherichia coli UTI89], gi\|910722...	368.0	[0..1]	[337..1]
gi\|189371793, gi... - gi\|189371793\|gb\|EDU90209.1\| ABC transporter, ATP-binding protein [Escherichia coli O157:H7 str. EC86... gi\|189378175, gi... - gi\|189378175\|gb\|EDU96591.1\| ABC transporter, ATP-binding protein [Escherichia coli O157:H7 str. EC50... gi\|195936932 - gi\|195936932\|ref\|ZP_03082314.1\| putative ATP-binding component of a transport system [Escherichia co... gi\|208724628, gi... - gi\|208811122\|ref\|ZP_03252955.1\| ABC transporter, ATP-binding protein [Escherichia coli O157:H7 str. ... gi\|168756081, gi... - gi\|189356710\|gb\|EDU75129.1\| ABC transporter, ATP-binding protein [Escherichia coli O157:H7 str. EC44... gi\|189368124, gi... - gi\|189368124\|gb\|EDU86540.1\| ABC transporter, ATP-binding protein [Escherichia coli O157:H7 str. EC45... gi\|187770074, gi... - gi\|187770074\|gb\|EDU33918.1\| ABC transporter, ATP-binding protein [Escherichia coli O157:H7 str. EC41... gi\|189000862, gi... - gi\|189000862\|gb\|EDU69848.1\| ABC transporter, ATP-binding protein [Escherichia coli O157:H7 str. EC40... gi\|168748959, gi... - gi\|188016669\|gb\|EDU54791.1\| ABC transporter, ATP-binding protein [Escherichia coli O157:H7 str. EC41... gi\|254792985, gi... - gi\|254792985\|ref\|YP_003077822.1\| predicted spermidine/putrescine transporter subunit, ATP-binding co... gi\|13361511, gi\|... - gi\|15831299\|ref\|NP_310072.1\| putative ATP-binding component of a transport system [Escherichia coli ... gi\|209770956, gi... - pir\|\|E90884 hypothetical protein ECs2045 [imported] - Escherichia coli (strain O157:H7, substrain R... gi\|13361511, gi\|... - gi\|15831299\|ref\|NP_310072.1\| putative ATP-binding component of a transport system [Escherichia coli ... gi\|15801702, gi\|... - gi\|15801702\|ref\|NP_287720.1\| putative ATP-binding component of a transport system [Escherichia coli ... gi\|208732366, gi... - gi\|208815718\|ref\|ZP_03256897.1\| ABC transporter, ATP-binding protein [Escherichia coli O157:H7 str. ... gi\|208818394, gi... - gi\|208818394\|ref\|ZP_03258714.1\| ABC transporter, ATP-binding protein [Escherichia coli O157:H7 str. ... gi\|209398098, gi... - gi\|209398098\|ref\|YP_002270447.1\| ABC transporter, ATP-binding protein [Escherichia coli O157:H7 str.... gi\|217317503, gi... - gi\|217329064\|ref\|ZP_03445144.1\| ABC transporter, ATP-binding protein [Escherichia coli O157:H7 str. ...	367.0	[0..1]	[337..1]
gi\|113726386, gi... - gi\|150395538\|ref\|YP_001326005.1\| spermidine/putrescine ABC transporter ATPase subunit [Sinorhizobium...	367.0	[0..2]	[333..20]
gi\|190904980, gi... - gi\|75231801\|ref\|ZP_00718142.1\| COG3842: ABC-type spermidine/putrescine transport systems, ATPase com...	367.0	[0..1]	[337..1]
gi\|194436626, gi... - gi\|83587784\|ref\|ZP_00926410.1\| COG3842: ABC-type spermidine/putrescine transport systems, ATPase com...	367.0	[0..1]	[337..1]

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Predicted Domain #1

Region A:
Residues: [1-337]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTYAVEFDNV SRLYGDVRAV DGVSIAIKDG EFFSMLGPSG SGKTTCLRLI AGFEQLSGGA  60
   61 ISIFGKPASN LPPWERDVNT VFQDYALFPH MSILDNVAYG LMVKGVNKKQ RHAMAQEALE 120
  121 KVALGFVHQR KPSQLSGGQR QRVAIARALV NEPRVLLLDE PLGALDLKLR EQMQLELKKL 180
  181 QQSLGITFIF VTHDQGEALS MSDRVAVFNN GRIEQVDSPR DLYMRPRTPF VAGFVGTSNV 240
  241 FDGLMAEKLC GMTGSFALRP EHIRLNTPGE LQANGTIQAV QYQGAATRFE LKLNGGEKLL 300
  301 VSQANMTGEE LPATLTPGQQ VMVSWSRDVM VPLVEER

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	98.30103
Match:	2d62A
Description:	No description for 2d62A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits