YRC Public Data Repository - Protein Structure Prediction

Protein:	YDCD_ECOLI
Organism:	Escherichia coli
Length:	160 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDCD_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|157155100, gi... - gi\|157155100\|ref\|YP_001461406.1\| hypothetical protein EcE24377A_0247 [Escherichia coli E24377A], gi\|... gi\|2921768 - gi\|2921768\|gb\|AAC32482.1\| dsORF-e1 [Escherichia coli] gi\|218350431, gi... - gi\|218693699\|ref\|YP_002401366.1\| hypothetical protein EC55989_0239 [Escherichia coli 55989], gi\|2183... gi\|218359587, gi... - gi\|218552819\|ref\|YP_002385732.1\| hypothetical protein ECIAI1_0254 [Escherichia coli IAI1], gi\|218359... gi\|209917426, gi... - gi\|209917426\|ref\|YP_002291510.1\| hypothetical protein ECSE_0235 [Escherichia coli SE11], gi\|20991068...	238.0	[0..1]	[160..1]
gi\|25389700, gi\|... - pir\|\|B85510 hypothetical protein Z0274 [imported] - Escherichia coli (strain O157:H7, substrain EDL... gi\|15799922, gi\|... - gi\|15799922\|ref\|NP_285934.1\| hypothetical protein Z0274 [Escherichia coli O157:H7 EDL933], gi\|125129... gi\|13359700, gi\|... - gi\|15829498\|ref\|NP_308271.1\| hypothetical protein ECs0244 [Escherichia coli O157:H7], gi\|13359700\|db... gi\|254791376, gi... - gi\|254791376\|ref\|YP_003076213.1\| hypothetical protein ECSP_0249 [Escherichia coli O157:H7 str. TW143... gi\|13359700, gi\|... - gi\|15829498\|ref\|NP_308271.1\| hypothetical protein ECs0244 [Escherichia coli O157:H7 str. Sakai], gi\|...	120.0	[0..74]	[160..1]
gi\|217325800, gi... - gi\|217325800\|ref\|ZP_03441884.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|15829497, gi\|... - gi\|15829497\|ref\|NP_308270.1\| hypothetical protein ECs0243 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|25389699, gi\|... - pir\|\|C90659 hypothetical protein ECs0243 [imported] - Escherichia coli (strain O157:H7, substrain R... gi\|15829497, gi\|... - gi\|15829497\|ref\|NP_308270.1\| hypothetical protein ECs0243 [Escherichia coli O157:H7], gi\|13359699\|db...	94.0	[0..1]	[56..1]

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Predicted Domain #1

Region A:
Residues: [1-160]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQIIRGKLV IFLITLCLFV VYLGFDNNSN SDIVFYGHKT PKSVEIYLSE KNIIYKIIND  60
   61 QKISRGNGHF ISIMVNNYRT HCGVVDINLN FFNDILYSVR LKNISKLENM EFCATKQRVY 120
  121 FSDKNKKASY KIINYGDYYD VDYYDNNLKN EVFDWIGKWS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.667	b.59.1	XRCC4, N-terminal domain
View	Download	0.647	d.110.1	Profilin (actin-binding protein)
View	Download	0.617	b.60.1	Lipocalins
View	Download	0.563	b.60.1	Lipocalins
View	Download	0.536	d.58.26	GHMP Kinase, C-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits