YRC Public Data Repository - Protein Structure Prediction

Protein:	YDCC_ECOLI
Organism:	Escherichia coli
Length:	378 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDCC_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|74310860, gi\|... - gi\|74310860\|ref\|YP_309279.1\| putative receptor [Shigella sonnei Ss046], gi\|73854337\|gb\|AAZ87044.1\| p...	528.0	[0..1]	[378..1]
gi\|194435694, gi... - gi\|194435694\|ref\|ZP_03067797.1\| ISEc3, transposase [Escherichia coli 101-1], gi\|194425237\|gb\|EDX4122... gi\|238902575, gi... - gi\|238902575\|ref\|YP_002928371.1\| putative transposase [Escherichia coli BW2952], gi\|238863253\|gb\|ACR... YHHI_ECOLI - H repeat-associated protein yhhI (ORF-H) - Escherichia coli gi\|190904742, gi... - gi\|191165340\|ref\|ZP_03027183.1\| ISEc3, transposase [Escherichia coli B7A], gi\|190904742\|gb\|EDV64448.... EG11525 - putative transposase / H repeat-associated protein, RhsE-linked, function unknown gi\|188492142, gi... - gi\|188492142\|ref\|ZP_02999412.1\| ISEc3, transposase [Escherichia coli 53638], gi\|188487341\|gb\|EDU6244... gi\|253771686, gi... - gi\|254290158\|ref\|YP_003055906.1\| predicted transposase [Escherichia coli BL21(DE3)], gi\|253979465\|gb... gi\|170082998, gi... - gi\|170082998\|ref\|YP_001732318.1\| transposase [Escherichia coli str. K-12 substr. DH10B], gi\|16989083... gi\|242379005, gi... - gi\|251786732\|ref\|YP_003001036.1\| hypothetical protein B21_03286 [Escherichia coli BL21], gi\|24237900... gi\|85676559, gi\|... - gi\|89110528\|ref\|AP_004308.1\| predicted transposase [Escherichia coli str. K-12 substr. W3110], gi\|85... gi\|253975309, gi... - gi\|254163408\|ref\|YP_003046516.1\| predicted transposase [Escherichia coli B str. REL606], gi\|25397530... EG11525 - putative transposase / H repeat-associated protein, RhsE-linked, function unknown	522.0	[0..1]	[378..1]
gi\|56123304 - gi\|56123304\|gb\|AAV74540.1\| H-repeat protein [Escherichia coli]	518.0	[0..1]	[378..1]
gi\|15799919, gi\|... - gi\|15799919\|ref\|NP_285931.1\| hypothetical protein Z0271 [Escherichia coli O157:H7 EDL933], gi\|125129... gi\|13359697, gi\|... - gi\|15829495\|ref\|NP_308268.1\| H repeat-associated protein [Escherichia coli O157:H7], gi\|13359697\|dbj... gi\|13359697, gi\|... - gi\|15829495\|ref\|NP_308268.1\| H repeat-containing protein [Escherichia coli O157:H7 str. Sakai], gi\|1... gi\|189366392, gi... - gi\|189366392\|gb\|EDU84808.1\| ISEc3, transposase [Escherichia coli O157:H7 str. EC4501], gi\|168763454\|... gi\|217322028, gi... - gi\|217325807\|ref\|ZP_03441891.1\| ISEc3, transposase [Escherichia coli O157:H7 str. TW14588], gi\|21732... gi\|25330362, gi\|... - pir\|\|G85509 H repeat-associated protein [imported] - Escherichia coli (strain O157:H7, substrain ED...	518.0	[0..1]	[378..1]
gi\|90324801, gi\|... - gi\|90414129\|ref\|ZP_01222111.1\| Putative transposase [Photobacterium profundum 3TCK], gi\|90324801\|gb\|...	492.0	[0..1]	[378..1]
gi\|2738475 - gi\|2738475\|gb\|AAC82491.1\| RfbQRSO155-1 [Vibrio cholerae]	477.0	[0..2]	[375..3]

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Predicted Domain #1

Region A:
Residues: [1-378]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELKKLMGHI SIIPDYRQAW KMEHKLSDIL LLTICAVISG AEGWEDIEDF GETHPDFLKQ  60
   61 YGDFENGIPV HDTIARVVSC ISPAKFHECF INWMRDCHSS DDKDVIAIDG KTLRHSYDKS 120
  121 RRRGAIHVIS AFSTMHSLVI GQIKTDEKSN EITAIPELLN MLDIKGKIIT TDAMGCQKDI 180
  181 AEKIQKQGGD YLFAVKGNQG RLNKAFEEKF PLKELNNPAH DSYAMSEKSH GREEIRLHIV 240
  241 CDVPDELIDF TFEWKGLKKL CVAVSFRSII AEQKKELEMT VRYYISSADL TAEKFATAIR 300
  301 NHWHVENKLH WRLDVVMNED DCKIRRGNAA ELFSGIRHIA INILTNDKVF KAGLRRKMRK 360
  361 AAMDRNYLAS VLTGSGLS

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.24
Match:	1muhA
Description:	Transposase inhibitor (Tn5 transposase)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits