YRC Public Data Repository - Protein Structure Prediction

Protein:	Y4923_PSEAE, YDC...
Organism:	Pseudomonas aeruginosa
Length:	195 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Y4923_PSEAE, YDC....

Description	E-value	Query Range	Subject Range
gi\|254238359, gi... - gi\|84317537\|ref\|ZP_00965977.1\| COG1611: Predicted Rossmann fold nucleotide-binding protein [Pseudomo...	7.0E-65	[1..195]	[1..195]
gi\|116053072, gi... - gi\|53726499\|ref\|ZP_00141397.2\| COG1611: Predicted Rossmann fold nucleotide-binding protein [Pseudomo...	9.0E-65	[1..195]	[1..195]
gi\|49082752 - gi\|49082752\|gb\|AAT50776.1\| PA4923 [synthetic construct]	1.0E-64	[1..195]	[1..195]
LOG3_ARATH - Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG3 OS=Arabidopsis thaliana GN=LOG3 PE=1 S...	3.0E-64	[2..195]	[12..205]
gi\|152988785, gi... - gi\|94417534\|ref\|ZP_01297352.1\| hypothetical protein PaerP_01000851 [Pseudomonas aeruginosa PA7], gi\|...	4.0E-64	[1..194]	[1..194]
gi\|87240936 - gi\|87240936\|gb\|ABD32794.1\| Conserved hypothetical protein 730 [Medicago truncatula]	6.0E-63	[2..195]	[12..205]
gi\|24986636, gi\|... - gi\|26991551\|ref\|NP_746976.1\| hypothetical protein PP_4871 [Pseudomonas putida KT2440], gi\|24986636\|g...	9.0E-63	[1..194]	[1..194]
gi\|148549951, gi... - gi\|82739738\|ref\|ZP_00902528.1\| Conserved hypothetical protein 730 [Pseudomonas putida F1], gi\|827131...	1.0E-62	[1..194]	[1..194]
gi\|91686542, gi\|... - gi\|91782588\|ref\|YP_557794.1\| hypothetical protein Bxe_A3240 [Burkholderia xenovorans LB400], gi\|9168...	4.0E-62	[3..190]	[1..188]

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Predicted Domain #1

Region A:
Residues: [1-195]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLRSVCVFC GASPGASPVY QEAAVALGRH LAERGLTLVY GGGAVGLMGT VADAALAAGG  60
   61 EVIGIIPQSL QEAEIGHKGL TRLEVVDGMH ARKARMAELA DAFIALPGGL GTLEELFEVW 120
  121 TWGQLGYHAK PLGLLEVNGF YDPLLTFLDH LVDERFVRAE HRGMLQRGAS PEALLDALAA 180
  181 WTPSVAPKWV DRTPQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	65.69897
Match:	2a33A
Description:	X-Ray Structure of a Lysine Decarboxylase-Like Protein from Arabidopsis Thaliana Gene AT2G37210
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits