YRC Public Data Repository - Protein Structure Prediction

Protein:	YDAV_ECOLI
Organism:	Escherichia coli
Length:	248 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDAV_ECOLI.

Description	E-value	Query Range	Subject Range
DNAA_CLOB8 - Chromosomal replication initiator protein DnaA OS=Clostridium beijerinckii (strain ATCC 51743 / NCIM...	177.0	[0..3]	[246..48]
DNAA_ALKMQ - Chromosomal replication initiator protein DnaA OS=Alkaliphilus metalliredigens (strain QYMF) GN=dnaA...	174.0	[0..44]	[247..89]
DNAA_BACCN - Chromosomal replication initiator protein DnaA OS=Bacillus cytotoxicus (strain DSM 22905 / CIP 11004...	174.0	[0..25]	[247..67]
gi\|75761786, gi\|... - gi\|75761786\|ref\|ZP_00741721.1\| Chromosomal replication initiator protein dnaA [Bacillus thuringiensi...	173.0	[0..25]	[247..86]
gi\|47093227, gi\|... - gi\|47093227\|ref\|ZP_00231000.1\| chromosomal replication initiator protein DnaA [Listeria monocytogene...	172.0	[0..67]	[247..92]
gi\|23193191 - gi\|23193191\|gb\|AAN14420.1\|AF319579_1 DnaA [Bacillus weihenstephanensis] DNAA_BACWK - Chromosomal replication initiator protein DnaA OS=Bacillus weihenstephanensis (strain KBAB4) GN=dnaA... gi\|228746667, gi... - gi\|229014656\|ref\|ZP_04171770.1\| Chromosomal replication initiator protein dnaA [Bacillus mycoides DS... gi\|228716178, gi... - gi\|229065149\|ref\|ZP_04200442.1\| Chromosomal replication initiator protein dnaA [Bacillus cereus AH60... gi\|229136315, gi... - gi\|229136315\|ref\|ZP_04265062.1\| Chromosomal replication initiator protein dnaA [Bacillus cereus BDRD... gi\|229170193, gi... - gi\|229170193\|ref\|ZP_04297879.1\| Chromosomal replication initiator protein dnaA [Bacillus cereus AH62...	172.0	[0..25]	[247..67]
gi\|194437038, gi... - gi\|83587495\|ref\|ZP_00926123.1\| COG1484: DNA replication protein [Escherichia coli 101-1], gi\|1944370...	172.0	[0..1]	[248..1]
gi\|229181735, gi... - gi\|229181735\|ref\|ZP_04309058.1\| Chromosomal replication initiator protein dnaA [Bacillus cereus 1725... DNAA_BACC4 - Chromosomal replication initiator protein DnaA OS=Bacillus cereus (strain B4264) GN=dnaA PE=3 SV=1 gi\|206970479, gi... - gi\|206970479\|ref\|ZP_03231432.1\| chromosomal replication initiator protein DnaA [Bacillus cereus AH11... DNAA_BACCR - Chromosomal replication initiator protein DnaA OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM ... gi\|228835452, gi... - gi\|228924234\|ref\|ZP_04087505.1\| Chromosomal replication initiator protein dnaA [Bacillus thuringiens... gi\|229051158, gi... - gi\|229051158\|ref\|ZP_04194702.1\| Chromosomal replication initiator protein dnaA [Bacillus cereus AH67... gi\|229072954, gi... - gi\|229072954\|ref\|ZP_04206150.1\| Chromosomal replication initiator protein dnaA [Bacillus cereus F651... gi\|228955739, gi... - gi\|228955739\|ref\|ZP_04117734.1\| Chromosomal replication initiator protein dnaA [Bacillus thuringiens... gi\|228797947, gi... - gi\|228961753\|ref\|ZP_04123356.1\| Chromosomal replication initiator protein dnaA [Bacillus thuringiens... gi\|228635464, gi... - gi\|229148039\|ref\|ZP_04276378.1\| Chromosomal replication initiator protein dnaA [Bacillus cereus BDRD... gi\|228629834, gi... - gi\|229153648\|ref\|ZP_04281824.1\| Chromosomal replication initiator protein dnaA [Bacillus cereus m155... gi\|229112902, gi... - gi\|229112902\|ref\|ZP_04242433.1\| Chromosomal replication initiator protein dnaA [Bacillus cereus Rock... gi\|229130735, gi... - gi\|229130735\|ref\|ZP_04259688.1\| Chromosomal replication initiator protein dnaA [Bacillus cereus BDRD...	171.0	[0..60]	[247..104]
DNAA_GEOKA - Chromosomal replication initiator protein DnaA OS=Geobacillus kaustophilus (strain HTA426) GN=dnaA P... DNAA_GEOKA - Chromosomal replication initiator protein DnaA OS=Geobacillus kaustophilus GN=dnaA PE=3 SV=1	171.0	[0..26]	[247..72]
DNAA_CALS4 - Chromosomal replication initiator protein DnaA OS=Caldanaerobacter subterraneus subsp. tengcongensis... DNAA_THETN - Chromosomal replication initiator protein dnaA OS=Thermoanaerobacter tengcongensis GN=dnaA PE=3 SV=1	171.0	[0..27]	[247..65]

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Predicted Domain #1

Region A:
Residues: [1-248]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKNIATGDVL ERIRRLAPSH VTAPFKTVAE WREWQLSEGQ KRCEEINRQN RQLRVEKILN  60
   61 RSGIQPLHRK CSFSNYQVQN EGQRYALSQA KSIADELMTG CTNFAFSGKP GTGKNHLAAA 120
  121 IGNRLLKDGQ TVIVVTVADV MSALHASYDD GQSGEKFLRE LCEVDLLVLD EIGIQRETKN 180
  181 EQVVLHQIVD RRTASMRSVG MLTNLNYEAM KTLLGERIMD RMTMNGGRWV NFNWESWRPN 240
  241 VVQPGIAK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.045757
Match:	1oz4A
Description:	VCP/p97
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.470983068319171	bayes_pls_golite062009
hydrolase activity	0.0582794297634999	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: