YRC Public Data Repository - Protein Structure Prediction

Protein:	YDAG_ECOLI
Organism:	Escherichia coli
Length:	44 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YDAG_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|7466159 - gi\|7466159\|pir\|\|F64885 hypothetical protein b1355 - Escherichia coli (strain K-12) gi\|1787618, gi\|1... - gb\|AAC74437.1\| orf, hypothetical protein; Rac prophage [Escherichia coli K12], gi\|16129316\|ref\|NP_4...	92.0	[0..1]	[44..16]
gi\|13361405, gi\|... - gi\|15831194\|ref\|NP_309967.1\| hypothetical protein ECs1940 [Escherichia coli O157:H7], gi\|13361405\|db... gi\|25499410, gi\|... - pir\|\|F85747 unknown protein encoded within prophage CP-933R [imported] - Escherichia coli (strain O1... gi\|13361405, gi\|... - gi\|15831194\|ref\|NP_309967.1\| hypothetical protein ECs1940 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|12515394, gi\|... - gi\|15801810\|ref\|NP_287828.1\| hypothetical protein Z2402 [Escherichia coli O157:H7 EDL933], gi\|125153... gi\|209918600, gi... - gi\|209918600\|ref\|YP_002292684.1\| hypothetical protein ECSE_1409 [Escherichia coli SE11], gi\|20991185...	92.0	[0..1]	[44..16]

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Predicted Domain #1

Region A:
Residues: [1-44]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVHYEVVQYL MDCCGITYNQ AVQALRSNDW DLWQAEVAIR SNKM

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits