YRC Public Data Repository - Protein Structure Prediction

Protein:	YCJF_ECOLI
Organism:	Escherichia coli
Length:	353 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YCJF_ECOLI.

Description	E-value	Query Range	Subject Range
YCJF_SHISS - UPF0283 membrane protein YcjF OS=Shigella sonnei (strain Ss046) GN=ycjF PE=3 SV=1	354.0	[0..1]	[353..1]
gi\|77979528 - gi\|77979528\|ref\|ZP_00834946.1\| COG3768: Predicted membrane protein [Yersinia intermedia ATCC 29909]	344.0	[0..1]	[351..1]
YCJF_ECO57 - UPF0283 membrane protein YcjF OS=Escherichia coli O157:H7 GN=ycjF PE=3 SV=1 gi\|217317825, gi... - gi\|217329386\|ref\|ZP_03445466.1\| conserved hypothetical protein TIGR01620 [Escherichia coli O157:H7 s... gi\|209771526, gi... - pir\|\|E90866 hypothetical protein ECs1901 [imported] - Escherichia coli (strain O157:H7, substrain R... gi\|195937988 - gi\|195937988\|ref\|ZP_03083370.1\| hypothetical protein EscherichcoliO157_16392 [Escherichia coli O157:... gi\|168799632, gi... - gi\|189377914\|gb\|EDU96330.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|189371862, gi... - gi\|189371862\|gb\|EDU90278.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|188999731, gi... - gi\|188999731\|gb\|EDU68717.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... YCJF_ECO5E - UPF0283 membrane protein YcjF OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=ycjF PE=3 SV=1 gi\|13361366, gi\|... - gi\|15831155\|ref\|NP_309928.1\| hypothetical protein ECs1901 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|208741795, gi... - gi\|208821672\|ref\|ZP_03261992.1\| conserved hypothetical protein TIGR01620 [Escherichia coli O157:H7 s... gi\|208816034, gi... - gi\|208816034\|ref\|ZP_03257213.1\| conserved hypothetical protein TIGR01620 [Escherichia coli O157:H7 s... gi\|208810852, gi... - gi\|208810852\|ref\|ZP_03252685.1\| conserved hypothetical protein TIGR01620 [Escherichia coli O157:H7 s... gi\|168749038, gi... - gi\|188016625\|gb\|EDU54747.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... gi\|168775147, gi... - gi\|187769298\|gb\|EDU33142.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... gi\|189361509, gi... - gi\|189361509\|gb\|EDU79928.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|168762664, gi... - gi\|189367086\|gb\|EDU85502.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|189356780, gi... - gi\|189356780\|gb\|EDU75199.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|254592315, gi... - gi\|254792915\|ref\|YP_003077752.1\| conserved inner membrane protein [Escherichia coli O157:H7 str. TW1...	340.0	[0..1]	[353..1]
YCJF_ECO24 - UPF0283 membrane protein YcjF OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=ycjF PE=3 SV=1 YCJF_ECOLU - UPF0283 membrane protein YcjF OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=ycjF PE=3 S... YCJF_SHIB3 - UPF0283 membrane protein YcjF OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=ycjF PE... gi\|194433828, gi... - gi\|83569454\|ref\|ZP_00920907.1\| COG3768: Predicted membrane protein [Shigella dysenteriae 1012], gi\|1... YCJF_ECO8A - UPF0283 membrane protein YcjF OS=Escherichia coli O8 (strain IAI1) GN=ycjF PE=3 SV=1 YCJF_ECO55 - UPF0283 membrane protein YcjF OS=Escherichia coli (strain 55989 / EAEC) GN=ycjF PE=3 SV=1 gi\|193062752, gi... - gi\|75259434\|ref\|ZP_00730753.1\| COG3768: Predicted membrane protein [Escherichia coli E22], gi\|193062... gi\|75240032, gi\|... - gi\|75240032\|ref\|ZP_00723993.1\| COG3768: Predicted membrane protein [Escherichia coli E110019], gi\|19... YCJF_ECOSE - UPF0283 membrane protein YcjF OS=Escherichia coli (strain SE11) GN=ycjF PE=3 SV=1 gi\|190904792, gi... - gi\|75231880\|ref\|ZP_00718221.1\| COG3768: Predicted membrane protein [Escherichia coli B7A], gi\|191165... gi\|75212762, gi\|... - gi\|75212762\|ref\|ZP_00712760.1\| COG3768: Predicted membrane protein [Escherichia coli B171], gi\|19442...	340.0	[0..1]	[353..1]
gi\|214000434 - gi\|214000434\|ref\|ZP_03411169.1\| hypothetical protein Salmonellentericaenterica_07306 [Salmonella ent... YCJF_SALTI - UPF0283 membrane protein YcjF OS=Salmonella typhi GN=ycjF PE=3 SV=1 YCJF_SALTI - UPF0283 membrane protein ycjF OS=Salmonella typhi GN=ycjF PE=3 SV=1 gi\|213850227 - gi\|213850227\|ref\|ZP_03381125.1\| hypothetical protein SentesT_01013 [Salmonella enterica subsp. enter... gi\|213609280 - gi\|213609280\|ref\|ZP_03369106.1\| hypothetical protein SentesTyp_01558 [Salmonella enterica subsp. ent... gi\|29142029, gi\|... - gi\|29142029\|ref\|NP_805371.1\| hypothetical protein t1589 [Salmonella enterica subsp. enterica serovar... gi\|213427986 - gi\|213427986\|ref\|ZP_03360736.1\| hypothetical protein SentesTyphi_21850 [Salmonella enterica subsp. e... gi\|16760202 - gi\|16760202\|ref\|NP_455819.1\| hypothetical protein STY1377 [Salmonella enterica subsp. enterica serov...	340.0	[0..1]	[353..1]
gi\|77958052 - gi\|77958052\|ref\|ZP_00822093.1\| COG3768: Predicted membrane protein [Yersinia bercovieri ATCC 43970]	340.0	[0..1]	[352..1]
YCJF_SHIBS - UPF0283 membrane protein YcjF OS=Shigella boydii serotype 4 (strain Sb227) GN=ycjF PE=3 SV=1	339.0	[0..1]	[353..1]
gi\|24112717, gi\|... - gi\|24112717\|ref\|NP_707227.1\| hypothetical protein SF1328 [Shigella flexneri 2a str. 301], gi\|2405163... YCJF_SHIF8 - UPF0283 membrane protein YcjF OS=Shigella flexneri serotype 5b (strain 8401) GN=ycjF PE=3 SV=1 YCJF_SHIFL - UPF0283 membrane protein YcjF OS=Shigella flexneri GN=ycjF PE=3 SV=1 gi\|30062840, gi\|... - gi\|30062840\|ref\|NP_837011.1\| hypothetical protein S1411 [Shigella flexneri 2a str. 2457T], gi\|300410...	339.0	[0..1]	[353..1]
gi\|77975341 - gi\|77975341\|ref\|ZP_00830877.1\| COG3768: Predicted membrane protein [Yersinia frederiksenii ATCC 3364...	338.0	[0..1]	[352..1]
gi\|77961685 - gi\|77961685\|ref\|ZP_00825517.1\| COG3768: Predicted membrane protein [Yersinia mollaretii ATCC 43969]	337.0	[0..1]	[352..1]

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Predicted Domain #1

Region A:
Residues: [1-182]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEPLKPRID FDGPLEVDQN PKFRAQQTFD ENQAQNFAPA TLDEAQEEEG QVEAVMDAAL  60
   61 RPKRSLWRKM VMGGLALFGA SVVGQGVQWT MNAWQTQDWV ALGGCAAGAL IIGAGVGSVV 120
  121 TEWRRLWRLR QRAHERDEAR DLLHSHGTGK GRAFCEKLAQ QAGIDQSHPA LQRWYASIHE 180
  181 TQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [183-353]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NDREVVSLYA HLVQPVLDAQ ARREISRSAA ESTLMIAVSP LALVDMAFIA WRNLRLINRI  60
   61 ATLYGIELGY YSRLRLFKLV LLNIAFAGAS ELVREVGMDW MSQDLAARLS TRAAQGIGAG 120
  121 LLTARLGIKA MELCRPLPWI DDDKPRLGDF RRQLIGQVKE TLQKGKTPSE K

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits