YRC Public Data Repository - Protein Structure Prediction

Protein:	DHAL_ECOLI, YCGS...
Organism:	Escherichia coli
Length:	210 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DHAL_ECOLI, YCGS....

Description	E-value	Query Range	Subject Range
gi\|238790049, gi... - gi\|77972929\|ref\|ZP_00828484.1\| COG2376: Dihydroxyacetone kinase [Yersinia frederiksenii ATCC 33641],...	230.0	[0..1]	[207..7]
gi\|77960667 - gi\|77960667\|ref\|ZP_00824528.1\| COG2376: Dihydroxyacetone kinase [Yersinia mollaretii ATCC 43969]	230.0	[0..1]	[207..7]
gi\|238726542, gi... - gi\|77977975\|ref\|ZP_00833411.1\| COG2376: Dihydroxyacetone kinase [Yersinia intermedia ATCC 29909], gi...	229.0	[0..1]	[207..1]
gi\|77959677 - gi\|77959677\|ref\|ZP_00823694.1\| COG2376: Dihydroxyacetone kinase [Yersinia bercovieri ATCC 43970]	228.0	[0..1]	[207..1]
gi\|218351445, gi... - gi\|218694713\|ref\|YP_002402380.1\| dihydroxyacetone kinase ADP-binding subunit [Escherichia coli 55989... gi\|75255354, gi\|... - gi\|75255354\|ref\|ZP_00727174.1\| COG2376: Dihydroxyacetone kinase [Escherichia coli E22], gi\|193066546... gi\|194416029, gi... - gi\|75212637\|ref\|ZP_00712635.1\| COG2376: Dihydroxyacetone kinase [Escherichia coli B171], gi\|19442597... gi\|157077756, gi... - gi\|75190253\|ref\|ZP_00703520.1\| COG2376: Dihydroxyacetone kinase [Escherichia coli E24377A], gi\|15715...	227.0	[0..1]	[210..1]
Y235_MYCCT - Putative kinase MCAP_0235 OS=Mycoplasma capricolum subsp. capricolum (strain California kid / ATCC 2...	226.0	[0..1]	[208..1]
gi\|209918439, gi... - gi\|209918439\|ref\|YP_002292523.1\| dihydroxyacetone kinase ADP-binding subunit [Escherichia coli SE11]... gi\|193071188, gi... - gi\|75233904\|ref\|ZP_00718364.1\| COG2376: Dihydroxyacetone kinase [Escherichia coli E110019], gi\|19307... gi\|75228267, gi\|... - gi\|75228267\|ref\|ZP_00714922.1\| COG2376: Dihydroxyacetone kinase [Escherichia coli B7A], gi\|191168520...	225.0	[0..1]	[210..1]
gi\|52307714, gi\|... - gi\|52425662\|ref\|YP_088799.1\| dihydroxyacetone kinase ADP-binding subunit [Mannheimia succiniciproduc...	225.0	[0..1]	[209..1]
gi\|223488820, gi... - gi\|254479380\|ref\|ZP_05092715.1\| dihydroxyacetone kinase, L subunit [Carboxydibrachium pacificum DSM ... gi\|20808399 - gi\|20808399\|ref\|NP_623570.1\| Dihydroxyacetone kinase [Thermoanaerobacter tengcongensis MB4] gi\|20517012, gi\|... - gi\|20808399\|ref\|NP_623570.1\| dihydroxyacetone kinase [Thermoanaerobacter tengcongensis MB4], gi\|2051...	224.0	[0..1]	[208..1]
gi\|15830958, gi\|... - gi\|15830958\|ref\|NP_309731.1\| dihydroxyacetone kinase [Escherichia coli O157:H7], gi\|13361169\|dbj\|BAB... gi\|25364725, gi\|... - pir\|\|F85699 glucokinase (EC 2.7.1.2) [imported] - Escherichia coli (strain O157:H7, substrain EDL93... gi\|15801429, gi\|... - gi\|15801429\|ref\|NP_287446.1\| dihydroxyacetone kinase ADP-binding subunit [Escherichia coli O157:H7 E... gi\|168764407, gi... - gi\|189365578\|gb\|EDU83994.1\| PTS-dependent dihydroxyacetone kinase, DhaL subunit [Escherichia coli O1... gi\|189375881, gi... - gi\|189375881\|gb\|EDU94297.1\| PTS-dependent dihydroxyacetone kinase, DhaL subunit [Escherichia coli O1... gi\|217328480, gi... - gi\|217328480\|ref\|ZP_03444562.1\| dihydroxyacetone kinase, L subunit [Escherichia coli O157:H7 str. TW... gi\|15830958, gi\|... - gi\|15830958\|ref\|NP_309731.1\| dihydroxyacetone kinase ADP-binding subunit [Escherichia coli O157:H7 s...	223.0	[0..1]	[210..1]

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Predicted Domain #1

Region A:
Residues: [1-210]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLSRTQIVN WLTRCGDIFS TESEYLTGLD REIGDADHGL NMNRGFSKVV EKLPAIADKD  60
   61 IGFILKNTGM TLLSSVGGAS GPLFGTFFIR AAQATQARQS LTLEELYQMF RDGADGVISR 120
  121 GKAEPGDKTM CDVWVPVVES LRQSSEQNLS VPVALEAASS IAESAAQSTI TMQARKGRAS 180
  181 YLGERSIGHQ DPGATSVMFM MQMLALAAKE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.30103
Match:	2btdA
Description:	No description for 2btdA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits