YRC Public Data Repository - Protein Structure Prediction

Protein:	YCCK_ECOLI, TUSE...
Organism:	Escherichia coli
Length:	109 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YCCK_ECOLI, TUSE....

Description	E-value	Query Range	Subject Range
gi\|12720651, gi\|... - gi\|15602266\|ref\|NP_245338.1\| hypothetical protein PM0401 [Pasteurella multocida subsp. multocida str...	204.0	[0..1]	[109..1]
gi\|145639033, gi... - gi\|145639033\|ref\|ZP_01794641.1\| predicted dissimilatory sulfite reductase, desulfoviridin, gamma sub... gi\|145636080, gi... - gi\|145636080\|ref\|ZP_01791750.1\| predicted dissimilatory sulfite reductase, desulfoviridin, gamma sub... gi\|42631670 - gi\|42631670\|ref\|ZP_00157208.1\| COG2920: Dissimilatory sulfite reductase (desulfoviridin), gamma subu...	202.0	[0..1]	[109..1]
gi\|81240408, gi\|... - gi\|82776260\|ref\|YP_402609.1\| putative sulfite reductase [Shigella dysenteriae Sd197], gi\|81240408\|gb...	202.0	[0..1]	[109..20]
gi\|149366578, gi... - gi\|149366578\|ref\|ZP_01888612.1\| putative sulfite reductase subunit protein [Yersinia pestis CA88-412... gi\|145598811, gi... - gi\|145598811\|ref\|YP_001162887.1\| sulfite reductase subunit protein [Yersinia pestis Pestoides F], gi... gi\|89103143, gi\|... - gi\|89103143\|ref\|ZP_01175734.1\| COG2920: Dissimilatory sulfite reductase (desulfoviridin), gamma subu... gi\|167424022, gi... - gi\|167424022\|ref\|ZP_02315775.1\| sulfurtransferase TusE [Yersinia pestis biovar Mediaevalis str. K197... gi\|108778649, gi... - gi\|108806736\|ref\|YP_650652.1\| putative sulfite reductase subunit protein [Yersinia pestis Antiqua], ... gi\|166962322, gi... - gi\|167419581\|ref\|ZP_02311334.1\| sulfurtransferase TusE [Yersinia pestis biovar Orientalis str. MG05-... gi\|229903088, gi... - gi\|229903088\|ref\|ZP_04518203.1\| sulfur transfer protein [Yersinia pestis Nepal516], gi\|229679868\|gb\|... gi\|170024843, gi... - gi\|170024843\|ref\|YP_001721348.1\| TusE/DsrC/DsvC family sulfur relay protein [Yersinia pseudotubercul... gi\|167467229 - gi\|167467229\|ref\|ZP_02331933.1\| sulfurtransferase TusE [Yersinia pestis FV-1] gi\|229697790, gi... - gi\|229841424\|ref\|ZP_04461583.1\| sulfur transfer protein [Yersinia pestis biovar Orientalis str. PEXU... gi\|21959609, gi\|... - gi\|22126601\|ref\|NP_670024.1\| sulfite reductase [Yersinia pestis KIM], gi\|21959609\|gb\|AAM86275.1\|AE01... gi\|229843534, gi... - gi\|229843534\|ref\|ZP_04463677.1\| sulfur transfer protein [Yersinia pestis biovar Orientalis str. Indi... gi\|45436025, gi\|... - gi\|45441165\|ref\|NP_992704.1\| putative sulfite reductase [Yersinia pestis biovar Microtus str. 91001]... gi\|186894888, gi... - gi\|186894888\|ref\|YP_001872000.1\| TusE/DsrC/DsvC family sulfur relay protein [Yersinia pseudotubercul... gi\|229703763, gi... - gi\|229894365\|ref\|ZP_04509548.1\| sulfur transfer protein [Yersinia pestis Pestoides A], gi\|229703763\|... gi\|153948047, gi... - gi\|77628694\|ref\|ZP_00791280.1\| COG2920: Dissimilatory sulfite reductase (desulfoviridin), gamma subu... TUSE_YERPE - Sulfurtransferase TusE OS=Yersinia pestis GN=tusE PE=3 SV=2 gi\|166011957, gi... - gi\|166011957\|ref\|ZP_02232855.1\| sulfurtransferase TusE [Yersinia pestis biovar Antiqua str. E1979001... gi\|165924372, gi... - gi\|165924372\|ref\|ZP_02220204.1\| sulfurtransferase TusE [Yersinia pestis biovar Orientalis str. F1991... gi\|167048292, gi... - gi\|167402326\|ref\|ZP_02307794.1\| sulfurtransferase TusE [Yersinia pestis biovar Antiqua str. UG05-045... gi\|166211328, gi... - gi\|166211328\|ref\|ZP_02237363.1\| sulfurtransferase TusE [Yersinia pestis biovar Antiqua str. B4200300...	202.0	[0..1]	[109..1]
gi\|238712716, gi... - gi\|77956176\|ref\|ZP_00820305.1\| COG2920: Dissimilatory sulfite reductase (desulfoviridin), gamma subu...	202.0	[0..1]	[109..1]
gi\|48868261, gi\|... - gi\|68250115\|ref\|YP_249227.1\| putative dissimilatory sulfite reductase, desulfoviridin, gamma subunit...	201.0	[0..1]	[109..1]
gi\|13360513 - gi\|13360513\|dbj\|BAB34476.1\| putative sulfite reductase [Escherichia coli O157:H7 str. Sakai] gi\|209774320, gi... - pir\|\|C85624 probable sulfite reductase [imported] - Escherichia coli (strain O157:H7, substrain EDL... gi\|15800828, gi\|... - gi\|15800828\|ref\|NP_286844.1\| hypothetical protein Z1321 [Escherichia coli O157:H7 EDL933], gi\|125141... gi\|13360513 - gi\|13360513\|dbj\|BAB34476.1\| putative sulfite reductase [Escherichia coli O157:H7]	201.0	[0..1]	[109..20]
gi\|110614532, gi... - gi\|110804984\|ref\|YP_688504.1\| sulfurtransferase TusE [Shigella flexneri 5 str. 8401], gi\|110614532\|g... gi\|74311526, gi\|... - gi\|74311526\|ref\|YP_309945.1\| putative sulfite reductase [Shigella sonnei Ss046], gi\|73855003\|gb\|AAZ8... gi\|81246118, gi\|... - gi\|82544707\|ref\|YP_408654.1\| putative sulfite reductase [Shigella boydii Sb227], gi\|81246118\|gb\|ABB6... gi\|30062508, gi\|... - gi\|30062508\|ref\|NP_836679.1\| putative sulfite reductase [Shigella flexneri 2a str. 2457T], gi\|300407... gi\|49176067, gi\|... - gi\|49176067\|ref\|NP_415489.3\| putative sulfite reductase [Escherichia coli K12], gb\|AAC74055.1\| putat... gi\|7449584 - gi\|7449584\|pir\|\|H64837 probable sulfite reductase gamma chain - Escherichia coli (strain K-12) gi\|24051253, gi\|... - gi\|24112382\|ref\|NP_706892.1\| putative sulfite reductase [Shigella flexneri 2a str. 301], gi\|24051253...	200.0	[0..1]	[109..20]
gi\|238795902, gi... - gi\|77963141\|ref\|ZP_00826954.1\| COG2920: Dissimilatory sulfite reductase (desulfoviridin), gamma subu...	200.0	[0..1]	[109..1]
gi\|162418748, gi... - gi\|77633185\|ref\|ZP_00795330.1\| COG2920: Dissimilatory sulfite reductase (desulfoviridin), gamma subu...	200.0	[0..1]	[109..1]

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Predicted Domain #1

Region A:
Residues: [1-109]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLIFEGKEIE TDTEGYLKES SQWSEPLAVV IAENEGISLS PEHWEVVRFV RDFYLEFNTS  60
   61 PAIRMLVKAM ANKFGEEKGN SRYLYRLFPK GPAKQATKIA GLPKPVKCI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.69897
Match:	1yx3A
Description:	NMR structure of Allochromatium vinosum DsrC: Northeast Structural Genomics Consortium target OP4
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits