YRC Public Data Repository - Protein Structure Prediction

Protein:	YCBU_ECOLI
Organism:	Escherichia coli
Length:	180 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YCBU_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|16132136, gi\|... - gb\|AAC77271.1\| fimbrial protein; fimbrial protein, internal segment [Escherichia coli K12], gi\|1613... gi\|537156\|gb\|AAA... - fimI [Escherichia coli] gi\|537156, gi\|13... - gi\|537156\|gb\|AAA97211.1\| fimI [Escherichia coli], pir\|\|S56540 fimI protein - Escherichia coli (strai...	147.0	[0..1]	[180..37]
gi\|117626623, gi... - gi\|117626623\|ref\|YP_859946.1\| FimI fimbrial protein [Escherichia coli APEC O1], gi\|115515747\|gb\|ABJ0...	147.0	[0..1]	[180..42]
gi\|209749352, gi... - pir\|\|B91288 fimbrial protein [imported] - Escherichia coli (strain O157:H7, substrain RIMD 0509952),... gi\|15834528, gi\|... - gi\|15834528\|ref\|NP_313301.1\| FimI [Escherichia coli O157:H7], gi\|13364752\|dbj\|BAB38697.1\| fimbrial p... gi\|15834528, gi\|... - gi\|15834528\|ref\|NP_313301.1\| FimI [Escherichia coli O157:H7 str. Sakai], gi\|13364752\|dbj\|BAB38697.1\|...	146.0	[0..1]	[180..37]
gi\|91213960, gi\|... - gi\|91213960\|ref\|YP_543946.1\| FimI fimbrial protein [Escherichia coli UTI89], gi\|91075534\|gb\|ABE10415...	146.0	[0..1]	[180..37]
gi\|15804890, gi\|... - gi\|15804890\|ref\|NP_290931.1\| fimbrial protein [Escherichia coli O157:H7 EDL933], gi\|12519322\|gb\|AAG5... gi\|25299237 - pir\|\|E86129 fimbrial protein [imported] - Escherichia coli (strain O157:H7, substrain EDL933)	146.0	[0..1]	[180..37]
gi\|110644757, gi... - gi\|110644757\|ref\|YP_672487.1\| fimbrin-like protein fimI precursor [Escherichia coli 536], gi\|1103463...	145.0	[0..1]	[180..34]
gi\|82546662, gi\|... - gi\|82546662\|ref\|YP_410609.1\| fimbrial protein [Shigella boydii Sb227], gi\|81248073\|gb\|ABB68781.1\| fi...	145.0	[0..1]	[180..34]
gi\|30065430, gi\|... - gi\|30065430\|ref\|NP_839601.1\| fimbrial protein [Shigella flexneri 2a str. 2457T], gi\|30043692\|gb\|AAP1... gi\|56384094, gi\|... - gi\|56480543\|ref\|NP_709920.2\| fimbrial protein [Shigella flexneri 2a str. 301], gi\|56384094\|gb\|AAN456...	145.0	[0..1]	[180..34]
EG11974 - fimbrial protein involved in type 1 pilus biosynthesis / FimA homolog required for fimbriae biosynth... FIMI_ECOLI - Fimbrin-like protein fimI precursor - Escherichia coli gi\|218373000, gi... - gi\|218703014\|ref\|YP_002410643.1\| fimbrial protein involved in type 1 pilus biosynthesis [Escherichia... gi\|251787559, gi... - gi\|251787559\|ref\|YP_003001863.1\| hypothetical protein B21_04146 [Escherichia coli BL21], gi\|24237983... gi\|218707982, gi... - gi\|218707982\|ref\|YP_002415501.1\| fimbrial protein involved in type 1 pilus biosynthesis [Escherichia... gi\|254290986, gi... - gi\|254290986\|ref\|YP_003056736.1\| fimbrial protein involved in type 1 pilus biosynthesis [Escherichia... gi\|238861088, gi... - gi\|238903408\|ref\|YP_002929204.1\| fimbrial protein involved in type 1 pilus biosynthesis [Escherichia... gi\|194426543, gi... - gi\|194426543\|ref\|ZP_03059097.1\| type-1 fimbrial protein homolog [Escherichia coli B171], gi\|19441528... gi\|218556846, gi... - gi\|218556846\|ref\|YP_002389760.1\| fimbrial protein involved in type 1 pilus biosynthesis [Escherichia... gi\|253976139, gi... - gi\|254164236\|ref\|YP_003047346.1\| fimbrial protein involved in type 1 pilus biosynthesis [Escherichia... gi\|218561491, gi... - gi\|218561491\|ref\|YP_002394404.1\| fimbrial protein involved in type 1 pilus biosynthesis [Escherichia... gi\|157163759, gi... - gi\|157163759\|ref\|YP_001461077.1\| type-1 fimbrial protein [Escherichia coli HS], gi\|157069439\|gb\|ABV0... EG11974 - fimbrial protein involved in type 1 pilus biosynthesis / FimA homolog required for fimbriae biosynth... gi\|89111027, gi\|... - gi\|89111027\|ref\|AP_004807.1\| fimbrial protein involved in type 1 pilus biosynthesis [Escherichia col...	143.0	[0..1]	[180..1]

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Predicted Domain #1

Region A:
Residues: [1-180]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKKTIFQCV ILFFSILNIH VGMAGPEQVS MHIYGNVVDQ GCDVATKSAL QNIHIGDFNI  60
   61 SDFQAANTVS TAADLNIDIT GCAAGITGAD VLFSGEADTL APTLLKLTDT GGSGGMATGI 120
  121 AVQILDAQSQ QEIPLNQVQP LTPLKAGDNT LKYQLRYKST KAGATGGNAT AVLYFDLVYQ 180
  181

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.69897
Match:	2uy6B
Description:	No description for 2uy6B was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits