YRC Public Data Repository - Protein Structure Prediction

Protein:	YCAK_ECOLI
Organism:	Escherichia coli
Length:	196 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YCAK_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|20089230, gi\|... - gi\|20089230\|ref\|NP_615305.1\| iron-sulfur flavoprotein [Methanosarcina acetivorans C2A], gi\|19914107\|...	141.0	[0..4]	[194..1]
gi\|73668836, gi\|... - gi\|73668836\|ref\|YP_304851.1\| putative NAD(P)H oxidoreductase(quinone) [Methanosarcina barkeri str. F...	141.0	[0..4]	[192..1]
gi\|20906081, gi\|... - gi\|21227687\|ref\|NP_633609.1\| iron-sulfur flavoprotein [Methanosarcina mazei Go1], gi\|20906081\|gb\|AAM...	139.0	[0..4]	[194..1]
gi\|74354168, gi\|... - gi\|77735599\|ref\|NP_001029495.1\| NAD(P)H dehydrogenase, quinone 2 [Bos taurus], gi\|74354168\|gb\|AAI027...	137.0	[0..1]	[196..1]
NQO1_RAT - NAD(P)H dehydrogenase [quinone] 1 OS=Rattus norvegicus GN=Nqo1 PE=1 SV=4 gi\|200084, gi\|21... - gi\|2137583\|pir\|\|I52851 NAD(P)H2 dehydrogenase (quinone) (EC 1.6.99.2) 1 [similarity] - mouse, gi\|200...	137.0	[0..1]	[195..1]
gi\|67532185, gi\|... - gi\|67546461\|ref\|ZP_00424374.1\| NAD(P)H dehydrogenase (quinone) [Burkholderia vietnamiensis G4], gi\|6...	137.0	[0..4]	[195..1]
gi\|50734103 - gi\|50734103\|ref\|XP_418973.1\| PREDICTED: hypothetical protein [Gallus gallus]	136.0	[0..1]	[195..1]

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Predicted Domain #1

Region A:
Residues: [1-196]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQSERIYLVW AHPRHDSLTA HIADAIHQRA MERKIQVTEL DLYRRNFNPV MTPEDEPDWK  60
   61 NMDKRYSPEV HQLYSELLEH DTLVVVFPLW WYSFPAMLKG YIDRVWNNGL AYGDGHKLPF 120
  121 NKVRWVALVG GDKESFVQMG WEKNISDYLK NMCSYLGIED ADVTFLCNTV VFDGEELHAS 180
  181 YYQSLLSQVR DMVDAL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.0
Match:	1zx1A
Description:	Human quinone oxidoreductase 2 (NQO2) in complex with the cytostatic prodrug CB1954
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits