YRC Public Data Repository - Protein Structure Prediction

Protein:	YBJX_ECOLI
Organism:	Escherichia coli
Length:	330 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YBJX_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|242376692, gi... - gi\|251784419\|ref\|YP_002998723.1\| hypothetical protein B21_00888 [Escherichia coli BL21], gi\|24237669... gi\|253972893, gi... - gi\|254160992\|ref\|YP_003044100.1\| hypothetical protein ECB_00882 [Escherichia coli B str. REL606], gi... gi\|253774093, gi... - gi\|254287800\|ref\|YP_003053548.1\| hypothetical protein ECD_00882 [Escherichia coli BL21(DE3)], gi\|253... gi\|218704306, gi... - gi\|218704306\|ref\|YP_002411825.1\| hypothetical protein ECUMN_1072 [Escherichia coli UMN026], gi\|21843... gi\|218694351, gi... - gi\|218694351\|ref\|YP_002402018.1\| hypothetical protein EC55989_0922 [Escherichia coli 55989], gi\|2183... gi\|218360231, gi... - gi\|218553463\|ref\|YP_002386376.1\| hypothetical protein ECIAI1_0917 [Escherichia coli IAI1], gi\|218360... gi\|209918126, gi... - gi\|209918126\|ref\|YP_002292210.1\| hypothetical protein ECSE_0935 [Escherichia coli SE11], gi\|20991138... gi\|194438702, gi... - gi\|194438702\|ref\|ZP_03070789.1\| conserved hypothetical protein [Escherichia coli 101-1], gi\|19442233... gi\|194413558, gi... - gi\|194428343\|ref\|ZP_03060884.1\| conserved hypothetical protein [Escherichia coli B171], gi\|194413558... gi\|157077129, gi... - gi\|157155099\|ref\|YP_001462075.1\| hypothetical protein EcE24377A_0949 [Escherichia coli E24377A], gi\|... gi\|192954921, gi... - gi\|193071764\|ref\|ZP_03052660.1\| conserved hypothetical protein [Escherichia coli E110019], gi\|192954... gi\|193064662, gi... - gi\|193064662\|ref\|ZP_03045741.1\| conserved hypothetical protein [Escherichia coli E22], gi\|192927719\|... gi\|74311422, gi\|... - gi\|74311422\|ref\|YP_309841.1\| putative enzyme [Shigella sonnei Ss046], gi\|73854899\|gb\|AAZ87606.1\| put... gi\|188494684, gi... - gi\|188494684\|ref\|ZP_03001954.1\| conserved hypothetical protein [Escherichia coli 53638], gi\|18848988... gi\|187732914, gi... - gi\|187732914\|ref\|YP_001880925.1\| hypothetical protein SbBS512_E2453 [Shigella boydii CDC 3083-94], g... gi\|170680310, gi... - gi\|170680310\|ref\|YP_001744330.1\| hypothetical protein EcSMS35_2284 [Escherichia coli SMS-3-5], gi\|17...	435.0	[0..1]	[330..1]
gi\|110804879, gi... - gi\|110804879\|ref\|YP_688399.1\| putative enzyme [Shigella flexneri 5 str. 8401], gi\|110614427\|gb\|ABF03... gi\|24051102, gi\|... - gi\|24112252\|ref\|NP_706762.1\| putative enzyme [Shigella flexneri 2a str. 301], gi\|24051102\|gb\|AAN4246... gi\|30062365, gi\|... - gi\|30062365\|ref\|NP_836536.1\| putative enzyme [Shigella flexneri 2a str. 2457T], gi\|30040610\|gb\|AAP16...	433.0	[0..1]	[330..1]
gi\|81244775, gi\|... - gi\|82543364\|ref\|YP_407311.1\| putative enzyme [Shigella boydii Sb227], gi\|81244775\|gb\|ABB65483.1\| put...	432.0	[0..1]	[330..1]
gi\|26107302, gi\|... - gi\|26246902\|ref\|NP_752942.1\| hypothetical protein c1012 [Escherichia coli CFT073], gi\|26107302\|gb\|AA... gi\|117623056, gi... - gi\|117623056\|ref\|YP_851969.1\| hypothetical protein APECO1_1217 [Escherichia coli APEC O1], gi\|115512... gi\|237707157, gi... - gi\|237707157\|ref\|ZP_04537638.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|91071486, gi\|... - gi\|91209912\|ref\|YP_539898.1\| hypothetical protein UTI89_C0881 [Escherichia coli UTI89], gi\|91071486\|... gi\|218688659, gi... - gi\|218688659\|ref\|YP_002396871.1\| hypothetical protein ECED1_0844 [Escherichia coli ED1a], gi\|2184262... gi\|191172100, gi... - gi\|191172100\|ref\|ZP_03033644.1\| conserved hypothetical protein [Escherichia coli F11], gi\|190907627\|... gi\|218364550, gi... - gi\|218557781\|ref\|YP_002390694.1\| hypothetical protein ECS88_0899 [Escherichia coli S88], gi\|21836455... gi\|110641078, gi... - gi\|110641078\|ref\|YP_668808.1\| hypothetical protein ECP_0892 [Escherichia coli 536], gi\|110342670\|gb\|...	431.0	[0..1]	[328..1]
gi\|81241748, gi\|... - gi\|82777600\|ref\|YP_403949.1\| putative enzyme [Shigella dysenteriae Sd197], gi\|81241748\|gb\|ABB62458.1...	426.0	[0..1]	[330..1]
gi\|208737666, gi... - gi\|208822181\|ref\|ZP_03262500.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|209397130, gi... - gi\|209397130\|ref\|YP_002269551.1\| hypothetical protein ECH74115_1037 [Escherichia coli O157:H7 str. E... gi\|209775166, gi... - pir\|\|G85599 probable enzyme ybjX [imported] - Escherichia coli (strain O157:H7, substrain EDL933), ... gi\|217324920, gi... - gi\|217324920\|ref\|ZP_03441004.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|12513907, gi\|... - gi\|15800635\|ref\|NP_286649.1\| putative enzyme [Escherichia coli O157:H7 EDL933], gi\|12513907\|gb\|AAG55... gi\|189365041, gi... - gi\|189404529\|ref\|ZP_02790088.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501... gi\|15830217, gi\|... - gi\|15830217\|ref\|NP_308990.1\| hypothetical protein ECs0963 [Escherichia coli O157:H7], gi\|13360422\|db... gi\|189405246, gi... - gi\|189405246\|ref\|ZP_02814135.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869]... gi\|208807910, gi... - gi\|208807910\|ref\|ZP_03250247.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|208732170, gi... - gi\|208815522\|ref\|ZP_03256701.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|188013692, gi... - gi\|188025292\|ref\|ZP_02777479.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113... gi\|189010698, gi... - gi\|189010698\|ref\|ZP_02808794.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076... gi\|189402650, gi... - gi\|189402650\|ref\|ZP_02783799.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401... gi\|189403351, gi... - gi\|189403351\|ref\|ZP_02794860.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486... gi\|189375367, gi... - gi\|189375367\|gb\|EDU93783.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|187776461, gi... - gi\|187776461\|ref\|ZP_02802883.2\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196... gi\|254792078, gi... - gi\|254792078\|ref\|YP_003076915.1\| hypothetical protein ECSP_0982 [Escherichia coli O157:H7 str. TW143... gi\|15830217, gi\|... - gi\|15830217\|ref\|NP_308990.1\| hypothetical protein ECs0963 [Escherichia coli O157:H7 str. Sakai], gi\|...	426.0	[0..1]	[330..1]
gi\|75195066 - gi\|75195066\|ref\|ZP_00705136.1\| COG2990: Uncharacterized protein conserved in bacteria [Escherichia c...	406.0	[0..15]	[330..1]
gi\|75210433 - gi\|75210433\|ref\|ZP_00710589.1\| COG2990: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|75189917 - gi\|75189917\|ref\|ZP_00703184.1\| COG2990: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|75178318 - gi\|75178318\|ref\|ZP_00698372.1\| COG2990: Uncharacterized protein conserved in bacteria [Shigella boyd... gi\|83585821 - gi\|83585821\|ref\|ZP_00924461.1\| COG2990: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|75511043 - gi\|75511043\|ref\|ZP_00733784.1\| COG2990: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|75257407 - gi\|75257407\|ref\|ZP_00728923.1\| COG2990: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|75214598 - gi\|75214598\|ref\|ZP_00713138.1\| COG2990: Uncharacterized protein conserved in bacteria [Escherichia c...	405.0	[0..15]	[330..1]
gi\|75229238 - gi\|75229238\|ref\|ZP_00715803.1\| COG2990: Uncharacterized protein conserved in bacteria [Escherichia c...	403.0	[0..15]	[330..1]
gi\|75240942 - gi\|75240942\|ref\|ZP_00724831.1\| COG2990: Uncharacterized protein conserved in bacteria [Escherichia c...	402.0	[0..15]	[328..1]

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Predicted Domain #1

Region A:
Residues: [1-221]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKSTPCITI DFMNMSQLTE RTFTPSESLS SLSLFLSLAR GQCRPGKFWH RRSFRQKFLL  60
   61 RSLIMPRLSV EWMNELSHWP NLNVLLTRQP RLPVRLHRPY LAANLSRKQL LEALRYHYAL 120
  121 LRECMSAEEF SLYLNTPGLQ LAKLEGKNGE QFTLELTMMI SMDKEGDSTI LFRNSEGIPL 180
  181 AEITFTLCEY QGKRTMFIGG LQGAKWEIPH QEIQNATKAC H

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [222-330]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GLFPKRLVME AACLFAQRLQ VEQIIAVSNE THIYRSLRYR DKEGKIHADY NAFWESVGGV  60
   61 CDAERHYRLP AQIARKEIAE IASKKRAEYR RRYEMLDAIQ PQMATMFRG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.680	N/A	N/A	d.87.2	CO dehydrogenase flavoprotein C-terminal domain-like
View	Download	0.452	N/A	N/A	a.46.1	Methionine synthase domain
View	Download	0.419	N/A	N/A	c.55.4	Translational machinery components
View	Download	0.399	N/A	N/A	a.46.1	Methionine synthase domain
View	Download	0.395	N/A	N/A	a.46.1	Methionine synthase domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits