YRC Public Data Repository - Protein Structure Prediction

Protein:	YBJO_ECOLI
Organism:	Escherichia coli
Length:	162 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YBJO_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|191166180, gi... - gi\|75230708\|ref\|ZP_00717179.1\| hypothetical protein EcolB7_01001168 [Escherichia coli B7A], gi\|19116...	242.0	[0..1]	[162..1]
gi\|62127077, gi\|... - gi\|62179444\|ref\|YP_215861.1\| hypothetical protein SC0874 [Salmonella enterica subsp. enterica serova... gi\|224582731, gi... - gi\|224582731\|ref\|YP_002636529.1\| putative inner membrane protein [Salmonella enterica subsp. enteric... gi\|161614855, gi... - gi\|161614855\|ref\|YP_001588820.1\| hypothetical protein SPAB_02608 [Salmonella enterica subsp. enteric...	213.0	[0..5]	[162..30]
gi\|197094429, gi... - gi\|197362952\|ref\|YP_002142589.1\| hypothetical protein SSPA1751 [Salmonella enterica subsp. enterica ... gi\|16419390, gi\|... - gi\|16764243\|ref\|NP_459858.1\| putative inner membrane protein [Salmonella typhimurium LT2], gi\|164193... gi\|198242106, gi... - gi\|198242106\|ref\|YP_002214846.1\| inner membrane protein YbjO [Salmonella enterica subsp. enterica se... gi\|56128286, gi\|... - gi\|56414029\|ref\|YP_151104.1\| hypothetical protein SPA1881 [Salmonella enterica subsp. enterica serov... lcl\|NC_016856.1_... - [gene=ybjO] [protein=putative inner membrane protein] [protein_id=YP_005236623.1] [location=953649..... gi\|238913399 - gi\|238913399\|ref\|ZP_04657236.1\| hypothetical protein SentesTe_20041 [Salmonella enterica subsp. ente... gi\|205271913, gi... - gi\|205352132\|ref\|YP_002225933.1\| hypothetical protein SG0862 [Salmonella enterica subsp. enterica se... gi\|207856314, gi... - gi\|207856314\|ref\|YP_002242965.1\| hypothetical protein SEN0827 [Salmonella enterica subsp. enterica s...	204.0	[0..6]	[162..1]
gi\|213647856 - gi\|213647856\|ref\|ZP_03377909.1\| hypothetical protein SentesTy_11564 [Salmonella enterica subsp. ente... gi\|213428047 - gi\|213428047\|ref\|ZP_03360797.1\| hypothetical protein SentesTyphi_22175 [Salmonella enterica subsp. e... gi\|213052507 - gi\|213052507\|ref\|ZP_03345385.1\| hypothetical protein Salmoneentericaenterica_06026 [Salmonella enter... gi\|214000348 - gi\|214000348\|ref\|ZP_03411083.1\| hypothetical protein Salmonellentericaenterica_06816 [Salmonella ent... gi\|16502084, gi\|... - gi\|25332836\|pir\|\|AF0606 probable membrane protein STY0914 [imported] - Salmonella enterica subsp. en... gi\|29142436, gi\|... - gi\|29142436\|ref\|NP_805778.1\| hypothetical protein t2015 [Salmonella enterica subsp. enterica serovar... gi\|16759791 - gi\|16759791\|ref\|NP_455408.1\| hypothetical protein STY0914 [Salmonella enterica subsp. enterica serov...	203.0	[0..6]	[162..1]
gi\|149366686, gi... - gi\|149366686\|ref\|ZP_01888720.1\| putative membrane protein [Yersinia pestis CA88-4125], gi\|149291060\|... gi\|145599633, gi... - gi\|145599633\|ref\|YP_001163709.1\| hypothetical protein YPDSF_2361 [Yersinia pestis Pestoides F], gi\|1... gi\|167469044 - gi\|167469044\|ref\|ZP_02333748.1\| hypothetical protein YpesF_14389 [Yersinia pestis FV-1] gi\|25332834 - pir\|\|AB0163 probable membrane protein YPO1335 [imported] - Yersinia pestis (strain CO92) gi\|229697660, gi... - gi\|229841294\|ref\|ZP_04461453.1\| predicted inner membrane protein [Yersinia pestis biovar Orientalis ... gi\|45441085, gi\|... - gi\|45441085\|ref\|NP_992624.1\| hypothetical protein YP_1258 [Yersinia pestis biovar Microtus str. 9100... gi\|229843397, gi... - gi\|229843397\|ref\|ZP_04463543.1\| predicted inner membrane protein [Yersinia pestis biovar Orientalis ... gi\|21959743, gi\|... - gi\|22126723\|ref\|NP_670146.1\| hypothetical protein y2846 [Yersinia pestis KIM], gi\|21959743\|gb\|AAM863... gi\|229700694, gi... - gi\|229895771\|ref\|ZP_04510941.1\| predicted inner membrane protein [Yersinia pestis Pestoides A], gi\|2... gi\|15979385, gi\|... - gi\|218928485\|ref\|YP_002346360.1\| hypothetical protein YPO1335 [Yersinia pestis CO92], gi\|16121617\|re... gi\|108806622, gi... - gi\|108806622\|ref\|YP_650538.1\| hypothetical protein YPA_0625 [Yersinia pestis Antiqua], gi\|108778535\|... gi\|162352502, gi... - gi\|77635188\|ref\|ZP_00797276.1\| hypothetical protein YpesA_01001504 [Yersinia pestis Angola], gi\|1624... gi\|229678995, gi... - gi\|229903225\|ref\|ZP_04518338.1\| predicted inner membrane protein [Yersinia pestis Nepal516], gi\|2296... gi\|165923662, gi... - gi\|165924602\|ref\|ZP_02220434.1\| putative membrane protein [Yersinia pestis biovar Orientalis str. F1... gi\|167399868, gi... - gi\|167399868\|ref\|ZP_02305386.1\| putative membrane protein [Yersinia pestis biovar Antiqua str. UG05-... gi\|166009868, gi... - gi\|166009868\|ref\|ZP_02230766.1\| putative membrane protein [Yersinia pestis biovar Antiqua str. E1979... gi\|167424040, gi... - gi\|167424040\|ref\|ZP_02315793.1\| putative membrane protein [Yersinia pestis biovar Mediaevalis str. K... gi\|165936099, gi... - gi\|89104713\|ref\|ZP_01177249.1\| hypothetical protein Ypesb_01001330 [Yersinia pestis biovar Orientali... gi\|166962213, gi... - gi\|167419472\|ref\|ZP_02311225.1\| putative membrane protein [Yersinia pestis biovar Orientalis str. MG...	200.0	[0..22]	[152..12]
gi\|186697805, gi... - gi\|186894779\|ref\|YP_001871891.1\| hypothetical protein YPTS_1462 [Yersinia pseudotuberculosis PB1/+],... gi\|117674179, gi... - gi\|77632324\|ref\|ZP_00794910.1\| hypothetical protein YpseI_01003724 [Yersinia pseudotuberculosis IP 3... Q66CN8\|Q66CN8_YERPS - Putative membrane protein - Yersinia pseudotuberculosis gi\|51588987, gi\|... - gi\|51595705\|ref\|YP_069896.1\| hypothetical protein YPTB1365 [Yersinia pseudotuberculosis IP 32953], g... gi\|170024951, gi... - gi\|170024951\|ref\|YP_001721456.1\| hypothetical protein YPK_2726 [Yersinia pseudotuberculosis YPIII], ...	200.0	[0..22]	[152..12]
gi\|77976848 - gi\|77976848\|ref\|ZP_00832316.1\| COG1174: ABC-type proline/glycine betaine transport systems, permease...	199.0	[0..22]	[152..22]
gi\|49612123, gi\|... - gi\|50121597\|ref\|YP_050764.1\| hypothetical protein ECA2673 [Pectobacterium atrosepticum SCRI1043], gi...	193.0	[0..15]	[162..2]
gi\|238720271, gi... - gi\|77960544\|ref\|ZP_00824411.1\| hypothetical protein YmolA_01003210 [Yersinia mollaretii ATCC 43969],...	186.0	[0..22]	[152..17]
gi\|238789654, gi... - gi\|77974801\|ref\|ZP_00830339.1\| COG1174: ABC-type proline/glycine betaine transport systems, permease...	184.0	[0..24]	[152..2]

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Predicted Domain #1

Region A:
Residues: [1-162]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEDETLGFFK KTSSSHARLN VPALVQVAAL AIIMIRGLDV LMIFNTLGVR GIGEFIHRSV  60
   61 QTWSLTLVFL SSLVLVFIEI WCAFSLVKGR RWARWLYLLT QITAASYLWA ASLGYGYPEL 120
  121 FSIPGESKRE IFHSLMLQKL PDMLILMLLF VPSTSRRFFQ LQ

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits