YRC Public Data Repository - Protein Structure Prediction

Protein:	YBJC_ECOLI
Organism:	Escherichia coli
Length:	95 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YBJC_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|77957666 - gi\|77957666\|ref\|ZP_00821716.1\| hypothetical protein YberA_01002134 [Yersinia bercovieri ATCC 43970]	145.0	[0..1]	[92..1]
gi\|77976854 - gi\|77976854\|ref\|ZP_00832322.1\| COG0580: Glycerol uptake facilitator and related permeases (Major Int...	142.0	[0..1]	[95..1]
gi\|77960538 - gi\|77960538\|ref\|ZP_00824405.1\| hypothetical protein YmolA_01003204 [Yersinia mollaretii ATCC 43969]	141.0	[0..1]	[92..1]
gi\|77974795 - gi\|77974795\|ref\|ZP_00830333.1\| COG0580: Glycerol uptake facilitator and related permeases (Major Int...	141.0	[0..1]	[94..1]
gi\|193064480, gi... - gi\|75257553\|ref\|ZP_00729050.1\| COG1266: Predicted metal-dependent membrane protease [Escherichia col... gi\|75210554, gi\|... - gi\|75210554\|ref\|ZP_00710702.1\| COG1266: Predicted metal-dependent membrane protease [Escherichia col...	139.0	[0..1]	[95..1]
gi\|82776071, gi\|... - gi\|82776071\|ref\|YP_402418.1\| hypothetical protein SDY_0745 [Shigella dysenteriae Sd197], gi\|81240219...	137.0	[0..1]	[95..1]
gi\|224582723, gi... - gi\|224582723\|ref\|YP_002636521.1\| hypothetical protein SPC_0912 [Salmonella enterica subsp. enterica ... gi\|197251790, gi... - gi\|197251790\|ref\|YP_002145827.1\| putative inner membrane protein [Salmonella enterica subsp. enteric... gi\|205347828, gi... - gi\|205347828\|gb\|EDZ34459.1\| putative inner membrane protein [Salmonella enterica subsp. enterica ser... gi\|62179437, gi\|... - gi\|62179437\|ref\|YP_215854.1\| hypothetical protein SC0867 [Salmonella enterica subsp. enterica serova... gi\|161364227, gi... - gi\|161614863\|ref\|YP_001588828.1\| putative inner membrane protein [Salmonella enterica subsp. enteric...	130.0	[0..1]	[95..1]
gi\|117623030, gi... - gi\|117623030\|ref\|YP_851943.1\| hypothetical protein APECO1_1243 [Escherichia coli APEC O1], gi\|115512... gi\|218364523, gi... - gi\|218557754\|ref\|YP_002390667.1\| hypothetical protein ECS88_0867 [Escherichia coli S88], gi\|21836452... gi\|110641052, gi... - gi\|110641052\|ref\|YP_668782.1\| hypothetical protein ECP_0864 [Escherichia coli 536], gi\|110342644\|gb\|... gi\|75238183, gi\|... - gi\|75240914\|ref\|ZP_00724803.1\| hypothetical protein EcolF_01001984 [Escherichia coli F11], gi\|752381... gi\|91209884, gi\|... - gi\|91209884\|ref\|YP_539870.1\| hypothetical protein UTI89_C0853 [Escherichia coli UTI89], gi\|91071458\|... gi\|226898397, gi... - gi\|237707187\|ref\|ZP_04537668.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689...	125.0	[0..1]	[95..1]
gi\|13360389, gi\|... - gi\|15830184\|ref\|NP_308957.1\| hypothetical protein ECs0930 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|209775430, gi... - pir\|\|F85595 hypothetical protein ybjC [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|15800602, gi\|... - gi\|15800602\|ref\|NP_286616.1\| hypothetical protein Z1077 [Escherichia coli O157:H7 EDL933], gi\|125138... gi\|209398233, gi... - gi\|209398233\|ref\|YP_002269519.1\| hypothetical protein ECH74115_1004 [Escherichia coli O157:H7 str. E... gi\|13360389, gi\|... - gi\|15830184\|ref\|NP_308957.1\| hypothetical protein ECs0930 [Escherichia coli O157:H7], gi\|13360389\|db... gi\|217321380, gi... - gi\|217325159\|ref\|ZP_03441243.1\| putative membrane protein [Escherichia coli O157:H7 str. TW14588], g... gi\|218553436, gi... - gi\|218553436\|ref\|YP_002386349.1\| hypothetical protein ECIAI1_0889 [Escherichia coli IAI1], gi\|218360... gi\|195936895 - gi\|195936895\|ref\|ZP_03082277.1\| hypothetical protein EscherichcoliO157_10585 [Escherichia coli O157:... gi\|254591446, gi... - gi\|254792046\|ref\|YP_003076883.1\| predicted inner membrane protein [Escherichia coli O157:H7 str. TW1... gi\|208728929, gi... - gi\|208809128\|ref\|ZP_03251465.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4206], gi... gi\|208814799, gi... - gi\|208814799\|ref\|ZP_03255978.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4045], gi... gi\|208738287, gi... - gi\|208822802\|ref\|ZP_03263121.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4042], gi... gi\|168776392, gi... - gi\|187768236\|gb\|EDU32080.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4196], gi\|168... gi\|189002921, gi... - gi\|189002921\|gb\|EDU71907.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4076], gi\|168... gi\|168787072, gi... - gi\|189373061\|gb\|EDU91477.1\| putative membrane protein [Escherichia coli O157:H7 str. EC869], gi\|1687... gi\|168799867, gi... - gi\|189377715\|gb\|EDU96131.1\| putative membrane protein [Escherichia coli O157:H7 str. EC508], gi\|1687... gi\|168750035, gi... - gi\|188015696\|gb\|EDU53818.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4113], gi\|168... gi\|189356261, gi... - gi\|189356261\|gb\|EDU74680.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4401], gi\|168... gi\|189366485, gi... - gi\|189366485\|gb\|EDU84901.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4501], gi\|168... gi\|189363425, gi... - gi\|189363425\|gb\|EDU81844.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4486], gi\|168...	125.0	[0..1]	[95..1]
gi\|218426197, gi... - gi\|218688633\|ref\|YP_002396845.1\| hypothetical protein ECED1_0814 [Escherichia coli ED1a], gi\|2184261... gi\|26246873, gi\|... - gi\|26246873\|ref\|NP_752913.1\| hypothetical protein c0983 [Escherichia coli CFT073], gi\|26107273\|gb\|AA... gi\|227884186, gi... - gi\|227884186\|ref\|ZP_04001991.1\| possible inner membrane protein [Escherichia coli 83972], gi\|2278389...	125.0	[0..1]	[95..1]

Back

Predicted Domain #1

Region A:
Residues: [1-95]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRAIGKLPKG VLILEFIGMM LLAVALLSVS DSLSLPEPFS RPEVQILMIF LGVLLMLPAA  60
   61 VVVILQVAKR LAPQLMNRPP QYSRSEREKD NDANH

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	78.958607
Match:	PF07214.3
Description:	No description for PF07214.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits