YRC Public Data Repository - Protein Structure Prediction

Protein:	YBIR_ECOLI
Organism:	Escherichia coli
Length:	372 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YBIR_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|115390913, gi... - gi\|115390913\|ref\|XP_001212961.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	226.0	[0..1]	[367..954]
gi\|111063706, gi... - gi\|169608556\|ref\|XP_001797697.1\| hypothetical protein SNOG_07360 [Phaeosphaeria nodorum SN15], gi\|11...	212.0	[0..1]	[367..506]
gi\|90304326, gi\|... - gi\|90304326\|gb\|EAS33957.1\| hypothetical protein CIMG_04981 [Coccidioides immitis RS], gi\|119189867\|r...	209.0	[0..1]	[367..617]
gi\|49076898, gi\|... - gi\|71021351\|ref\|XP_760906.1\| hypothetical protein UM04759.1 [Ustilago maydis 521], ref\|XP_402374.1\| ...	208.0	[0..1]	[371..585]
gi\|116057365 - gi\|116057365\|emb\|CAL51792.1\| permease (ISS) [Ostreococcus tauri]	204.0	[0..6]	[369..291]
gi\|42548023, gi\|... - gi\|46116990\|ref\|XP_384513.1\| hypothetical protein FG04337.1 [Gibberella zeae PH-1], gi\|42548023\|gb\|E...	203.0	[0..1]	[332..521]
gi\|66847808, gi\|... - gi\|70990654\|ref\|XP_750176.1\| plasma membrane phosphate transporter Pho87 [Aspergillus fumigatus Af29...	202.0	[0..1]	[367..636]
gi\|116199663, gi... - gi\|88179266\|gb\|EAQ86734.1\| hypothetical protein CHGG_07987 [Chaetomium globosum CBS 148.51], gi\|1161...	200.0	[0..1]	[368..534]
gi\|40747412, gi\|... - gi\|67516375\|ref\|XP_658073.1\| hypothetical protein AN0469.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	197.0	[0..1]	[367..682]
gi\|169771137 - gi\|169771137\|ref\|XP_001820038.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83767897 - gi\|83767897\|dbj\|BAE58036.1\| unnamed protein product [Aspergillus oryzae]	194.0	[0..1]	[371..429]

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Predicted Domain #1

Region A:
Residues: [1-184]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLPFLRTLQ GDRFFQLLIL VGIGLSFFVP FAPKSWPAAI DWHTIITLSG LMLLTKGVEL  60
   61 SGYFDVLGRK MVRRFATERR LAMFMVLAAA LLSTFLTNDV ALFIVVPLTI TLKRLCEIPV 120
  121 NRLIIFEALA VNAGSLLTPI GNPQNILIWG RSGLSFAGFI AQMAPLAGAM MLTLLLLCWC 180
  181 CFPG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [185-372]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KAMQYHTGVQ TPEWKPRLVW SCLGLYIVFL TALEFKQELW GLVIVAAGFA LLARRVVLSV  60
   61 DWTLLLVFMA MFIDVHLLTQ LPALQGVLGN VSHLSEPGLW LTAIGLSQVI SNVPSTILLL 120
  121 NYVPPSLLLV WAVNVGGFGL LPGSLANLIA LRMANDRRIW WRFHLYSIPM LLWAALVGYV 180
  181 LLVILPAN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits