YRC Public Data Repository - Protein Structure Prediction

Protein:	YBIC_ECOLI
Organism:	Escherichia coli
Length:	361 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YBIC_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|227838988, gi... - gi\|227884236\|ref\|ZP_04002041.1\| possible L-lactate dehydrogenase [Escherichia coli 83972], gi\|227838... gi\|26246775, gi\|... - gi\|26246775\|ref\|NP_752815.1\| hypothetical protein c0885 [Escherichia coli CFT073], gi\|26107174\|gb\|AA...	418.0	[0..1]	[361..1]
gi\|117622983, gi... - gi\|117622983\|ref\|YP_851896.1\| hypothetical protein APECO1_1289 [Escherichia coli APEC O1], gi\|115512... gi\|218557706, gi... - gi\|218557706\|ref\|YP_002390619.1\| hypothetical protein ECS88_0819 [Escherichia coli S88], gi\|21836447... gi\|226898449, gi... - gi\|237707239\|ref\|ZP_04537720.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689...	418.0	[0..1]	[361..1]
gi\|193069342, gi... - gi\|75236141\|ref\|ZP_00720265.1\| COG2055: Malate/L-lactate dehydrogenases [Escherichia coli E110019], ...	417.0	[0..1]	[361..1]
gi\|75257601, gi\|... - gi\|75257601\|ref\|ZP_00729098.1\| COG2055: Malate/L-lactate dehydrogenases [Escherichia coli E22], gi\|1... gi\|81244657, gi\|... - gi\|82543246\|ref\|YP_407193.1\| hypothetical protein SBO_0689 [Shigella boydii Sb227], gi\|81244657\|gb\|A... gi\|75178409, gi\|... - gi\|75178409\|ref\|ZP_00698463.1\| COG2055: Malate/L-lactate dehydrogenases [Shigella boydii BS512], gi\|... gi\|194428180, gi... - gi\|75210605\|ref\|ZP_00710753.1\| COG2055: Malate/L-lactate dehydrogenases [Escherichia coli B171], gi\|...	417.0	[0..1]	[361..1]
YBIC_ECO57 - Uncharacterized oxidoreductase YbiC OS=Escherichia coli O157:H7 GN=ybiC PE=3 SV=1 gi\|254791996, gi... - gi\|254791996\|ref\|YP_003076833.1\| predicted dehydrogenase [Escherichia coli O157:H7 str. TW14359], gi... gi\|188014057, gi... - gi\|188014057\|gb\|EDU52179.1\| malate/L-lactate dehydrogenase [Escherichia coli O157:H7 str. EC4113], g... gi\|13360338, gi\|... - gi\|15830133\|ref\|NP_308906.1\| hypothetical protein ECs0879 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|209775880, gi... - pir\|\|G90738 probable dehydrogenase [imported] - Escherichia coli (strain O157:H7, substrain RIMD 050... gi\|209397893, gi... - gi\|209397893\|ref\|YP_002269471.1\| malate/L-lactate dehydrogenase [Escherichia coli O157:H7 str. EC411... gi\|208822253, gi... - gi\|208822253\|ref\|ZP_03262572.1\| malate/L-lactate dehydrogenase [Escherichia coli O157:H7 str. EC4042... gi\|208731598, gi... - gi\|208814950\|ref\|ZP_03256129.1\| malate/L-lactate dehydrogenase [Escherichia coli O157:H7 str. EC4045... gi\|208726825, gi... - gi\|208807024\|ref\|ZP_03249361.1\| malate/L-lactate dehydrogenase [Escherichia coli O157:H7 str. EC4206... gi\|217320972, gi... - gi\|217324751\|ref\|ZP_03440835.1\| malate/L-lactate dehydrogenase [Escherichia coli O157:H7 str. TW1458... gi\|168777217, gi... - gi\|187767480\|gb\|EDU31324.1\| malate/L-lactate dehydrogenase [Escherichia coli O157:H7 str. EC4196], g... gi\|168767304, gi... - gi\|189363438\|gb\|EDU81857.1\| malate/L-lactate dehydrogenase [Escherichia coli O157:H7 str. EC4486], g... gi\|189365673, gi... - gi\|189365673\|gb\|EDU84089.1\| malate/L-lactate dehydrogenase [Escherichia coli O157:H7 str. EC4501], g... gi\|168756588, gi... - gi\|189356229\|gb\|EDU74648.1\| malate/L-lactate dehydrogenase [Escherichia coli O157:H7 str. EC4401], g... gi\|195936841 - gi\|195936841\|ref\|ZP_03082223.1\| hypothetical protein EscherichcoliO157_10315 [Escherichia coli O157:... gi\|168799924, gi... - gi\|189377749\|gb\|EDU96165.1\| malate/L-lactate dehydrogenase [Escherichia coli O157:H7 str. EC508], gi... gi\|168787016, gi... - gi\|189373154\|gb\|EDU91570.1\| malate/L-lactate dehydrogenase [Escherichia coli O157:H7 str. EC869], gi... gi\|189002740, gi... - gi\|189002740\|gb\|EDU71726.1\| malate/L-lactate dehydrogenase [Escherichia coli O157:H7 str. EC4076], g...	417.0	[0..1]	[361..1]
gi\|12513797, gi\|... - gi\|15800553\|ref\|NP_286565.1\| hypothetical protein Z1022 [Escherichia coli O157:H7 EDL933], gi\|125137... gi\|25321089 - gi\|25321089\|pir\|\|A85589 probable dehydrogenase ybiC [imported] - Escherichia coli (strain O157:H7, ...	417.0	[0..1]	[361..1]
gi\|110804801, gi... - gi\|110804801\|ref\|YP_688321.1\| hypothetical protein SFV_0784 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|30062286, gi\|... - gi\|30062286\|ref\|NP_836457.1\| hypothetical protein S0792 [Shigella flexneri 2a str. 2457T], gi\|300405... gi\|24112169, gi\|... - gi\|24112169\|ref\|NP_706679.1\| hypothetical protein SF0751 [Shigella flexneri 2a str. 301], gi\|2405100...	416.0	[0..1]	[361..1]
gi\|157081021, gi... - gi\|75189842\|ref\|ZP_00703109.1\| COG2055: Malate/L-lactate dehydrogenases [Escherichia coli E24377A], ...	416.0	[0..1]	[361..1]
gi\|81240270, gi\|... - gi\|82776122\|ref\|YP_402469.1\| hypothetical protein SDY_0798 [Shigella dysenteriae Sd197], gi\|81240270...	416.0	[0..1]	[361..1]
gi\|110641005, gi... - gi\|110641005\|ref\|YP_668733.1\| hypothetical protein ECP_0815 [Escherichia coli 536], gi\|110342597\|gb\|...	416.0	[0..1]	[361..1]

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Predicted Domain #1

Region A:
Residues: [1-361]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESGHRFDAQ TLHSFIQAVF RQMGSEEQEA KLVADHLIAA NLAGHDSHGI GMIPSYVRSW  60
   61 SQGHLQINHH AKTVKEAGAA VTLDGDRAFG QVAAHEAMAL GIEKAHQHGI AAVALHNSHH 120
  121 IGRIGYWAEQ CAAAGFVSIH FVSVVGIPMV APFHGRDSRF GTNPFCVVFP RKDNFPLLLD 180
  181 YATSAIAFGK TRVAWHKGVP VPPGCLIDVN GVPTTNPAVM QESPLGSLLT FAEHKGYALA 240
  241 AMCEILGGAL SGGKTTHQET LQTSPDAILN CMTTIIINPE LFGAPDCNAQ TEAFAEWVKA 300
  301 SPHDDDKPIL LPGEWEVNTR RERQKQGIPL DAGSWQAICD AARQIGMPEE TLQAFCQQLA 360
  361 S

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	117.0
Match:	2g8yA
Description:	No description for 2g8yA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits