YRC Public Data Repository - Protein Structure Prediction

Protein:	YBIB_ECOLI
Organism:	Escherichia coli
Length:	320 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YBIB_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|196253698, gi... - gi\|196253698\|ref\|ZP_03152312.1\| anthranilate phosphoribosyltransferase [Clostridium thermocellum DSM... TRPD_CLOTH - Anthranilate phosphoribosyltransferase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / N...	369.0	[0..6]	[320..1]
TRPD_METJA - Anthranilate phosphoribosyltransferase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 266... TRPD_METJA - Anthranilate phosphoribosyltransferase OS=Methanocaldococcus jannaschii GN=trpD PE=3 SV=1	343.0	[0..6]	[320..1]
gi\|95930492, gi\|... - gi\|95930492\|ref\|ZP_01313228.1\| anthranilate phosphoribosyltransferase [Desulfuromonas acetoxidans DS...	341.0	[0..6]	[320..1]
gi\|147920704, gi... - gi\|147920704\|ref\|YP_685492.1\| anthranilate synthase, component II (including glutamine amidotransfer...	340.0	[0..7]	[320..190]
TRPD_BRADU - Anthranilate phosphoribosyltransferase OS=Bradyrhizobium diazoefficiens (strain JCM 10833 / IAM 1362... TRPD_BRAJA - Anthranilate phosphoribosyltransferase OS=Bradyrhizobium japonicum GN=trpD PE=3 SV=1	333.0	[0..5]	[320..2]
TRPD_GEOMG - Anthranilate phosphoribosyltransferase OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM...	330.0	[0..6]	[320..1]
TRPD_RHOPA - Anthranilate phosphoribosyltransferase OS=Rhodopseudomonas palustris GN=trpD PE=3 SV=1 trpD - trpD anthranilate phosphoribosyltransferase 3267977:3268993 forward MW:34425	330.0	[0..3]	[320..1]
gi\|68248169, gi\|... - gi\|69255804\|ref\|ZP_00605546.1\| Anthranilate phosphoribosyl transferase [Magnetococcus sp. MC-1], gi\|...	330.0	[0..7]	[320..3]
gi\|114536979, gi... - gi\|114707420\|ref\|ZP_01440316.1\| anthranilate phosphoribosyltransferase [Fulvimarina pelagi HTCC2506]...	329.0	[0..3]	[320..1]
TRPD_METAC - Anthranilate phosphoribosyltransferase OS=Methanosarcina acetivorans GN=trpD PE=3 SV=1 TRPD_METAC - Anthranilate phosphoribosyltransferase OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 /...	329.0	[0..7]	[320..4]

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Predicted Domain #1

Region A:
Residues: [1-320]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDYRKIIKEI GRGKNHARDL DRDTARGLYA HMLNGEVPDL ELGGVLIALR IKGEGEAEML  60
   61 GFYEAMQNHT IKLTPPAGKP MPIVIPSYNG ARKQANLTPL LAILLHKLGF PVVVHGVSED 120
  121 PTRVLTETIF ELMGITPTLH GGQAQAKLDE HQPVFMPVGA FCPPLEKQLA MRWRMGVRNS 180
  181 AHTLAKLATP FAEGEALRLS SVSHPEYIGR VAKFFSDIGG RALLMHGTEG EVYANPQRCP 240
  241 QINLIDREGM RVLYEKQDTA GSELLPQAKD PETTAQWIER CLAGSEPIPE SLKIQMACCL 300
  301 VATGEAATIS DGLARVNQAF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	80.30103
Match:	1kgzA
Description:	Anthranilate phosphoribosyltransferase (TrpD)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.46176712656049	bayes_pls_golite062009
transferase activity	0.81464991834813	bayes_pls_golite062009
transferase activity, transferring glycosyl groups	0.66332294370811	bayes_pls_golite062009
transferase activity, transferring pentosyl groups	0.39419152146588	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: