YRC Public Data Repository - Protein Structure Prediction

Protein:	YBHM_ECOLI
Organism:	Escherichia coli
Length:	237 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YBHM_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|157128927, gi... - gi\|157128927\|ref\|XP_001661552.1\| nmda receptor glutamate-binding chain [Aedes aegypti], gi\|108872427...	178.0	[0..8]	[229..97]
gi\|73974854 - gi\|73974854\|ref\|XP_532348.2\| PREDICTED: similar to glutamate receptor, ionotropic, N-methyl D-aspara...	177.0	[0..9]	[225..272]
gi\|42554571, gi\|... - gi\|46135813\|ref\|XP_389598.1\| hypothetical protein FG09422.1 [Gibberella zeae PH-1], gi\|42554571\|gb\|E...	175.0	[0..4]	[230..56]
gi\|109087974, gi... - gi\|109087976\|ref\|XP_001098441.1\| PREDICTED: similar to glutamate receptor, ionotropic, N-methyl D-as...	173.0	[0..10]	[225..152]
gi\|60477740 - gi\|60477740\|gb\|AAH41788.2\| Glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1...	173.0	[0..7]	[225..149]
gi\|116194003, gi... - gi\|88182632\|gb\|EAQ90100.1\| hypothetical protein CHGG_06719 [Chaetomium globosum CBS 148.51], gi\|1161...	171.0	[0..4]	[230..56]
gi\|147904118, gi... - gi\|27503256\|gb\|AAH42223.1\| Grina-prov protein [Xenopus laevis], gi\|147904118\|ref\|NP_001080331.1\| NMD...	171.0	[0..7]	[225..156]
gi\|114622146 - gi\|114622146\|ref\|XP_520009.2\| PREDICTED: similar to Glutamate receptor, ionotropic, N-methyl D-aspar...	171.0	[0..7]	[225..149]
gi\|47225500 - gi\|47225500\|emb\|CAG11983.1\| unnamed protein product [Tetraodon nigroviridis]	168.0	[0..2]	[229..143]

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Predicted Domain #1

Region A:
Residues: [1-65]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESYSQNSNK LDFQHEARIL NGIWLITALG LVATAGLAWG AKYIEITATK YDSPPMYVAI  60
   61 GLLLL

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [66-237]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CMYGLSKDIN KINAAIAGVI YLFLLSLVAI VVASLVPVYA IIIVFSTAGA MFLISMLAGL  60
   61 LFNVDPGSHR FIIMMTLTGL ALVIIVNAAL MSERPIWIIS CLMIVLWSGI ISHGRNKLLE 120
  121 LAGKCHSEEL WSPVRCAFTG ALTLYYYFIG FFGILAAIAI TLVWQRHTRF FH

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits