YRC Public Data Repository - Protein Structure Prediction

Protein:	YBHC_ECOLI
Organism:	Escherichia coli
Length:	427 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YBHC_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|91071375, gi\|... - gi\|91209801\|ref\|YP_539787.1\| putative pectinesterase [Escherichia coli UTI89], gi\|91071375\|gb\|ABE062... gi\|227839019, gi... - gi\|227884267\|ref\|ZP_04002072.1\| pectinesterase [Escherichia coli 83972], gi\|227839019\|gb\|EEJ49485.1\|... gi\|237707271, gi... - gi\|237707271\|ref\|ZP_04537752.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|117622955, gi... - gi\|117622955\|ref\|YP_851868.1\| putative pectinesterase [Escherichia coli APEC O1], gi\|115512079\|gb\|AB... gi\|218364446, gi... - gi\|218557677\|ref\|YP_002390590.1\| putative pectinesterase [Escherichia coli S88], gi\|218364446\|emb\|CA... gi\|215485787, gi... - gi\|215485787\|ref\|YP_002328218.1\| putative pectinesterase [Escherichia coli O127:H6 str. E2348/69], g... gi\|26107138, gi\|... - gi\|26246739\|ref\|NP_752779.1\| putative pectinesterase [Escherichia coli CFT073], gi\|26107138\|gb\|AAN79...	317.0	[0..1]	[427..1]
gi\|74311310, gi\|... - gi\|74311310\|ref\|YP_309729.1\| putative pectinesterase [Shigella sonnei Ss046], gi\|73854787\|gb\|AAZ8749...	317.0	[0..1]	[427..1]
gi\|189366445, gi... - gi\|189366445\|gb\|EDU84861.1\| pectinesterase [Escherichia coli O157:H7 str. EC4501], gi\|168763363\|ref\|... gi\|13360259, gi\|... - gi\|15830054\|ref\|NP_308827.1\| putative pectinesterase [Escherichia coli O157:H7 str. Sakai], gi\|13360... gi\|189355825, gi... - gi\|189355825\|gb\|EDU74244.1\| pectinesterase [Escherichia coli O157:H7 str. EC4401], gi\|168757062\|ref\|... gi\|254591323, gi... - gi\|254791923\|ref\|YP_003076760.1\| predicted pectinesterase [Escherichia coli O157:H7 str. TW14359], g... gi\|168750265, gi... - gi\|188015523\|gb\|EDU53645.1\| pectinesterase [Escherichia coli O157:H7 str. EC4113], gi\|168750265\|ref\|... gi\|168786932, gi... - gi\|189373131\|gb\|EDU91547.1\| pectinesterase [Escherichia coli O157:H7 str. EC869], gi\|168786932\|ref\|Z... gi\|168779261, gi... - gi\|189002869\|gb\|EDU71855.1\| pectinesterase [Escherichia coli O157:H7 str. EC4076], gi\|168779261\|ref\|... gi\|187768188, gi... - gi\|187768188\|gb\|EDU32032.1\| pectinesterase [Escherichia coli O157:H7 str. EC4196], gi\|168776482\|ref\|... gi\|168767218, gi... - gi\|189363380\|gb\|EDU81799.1\| pectinesterase [Escherichia coli O157:H7 str. EC4486], gi\|168767218\|ref\|... gi\|209776156, gi... - pir\|\|A85580 probable pectinesterase ybhC [imported] - Escherichia coli (strain O157:H7, substrain E... gi\|15800481, gi\|... - gi\|15800481\|ref\|NP_286493.1\| putative pectinesterase [Escherichia coli O157:H7 EDL933], gi\|12513707\|... gi\|13360259, gi\|... - gi\|15830054\|ref\|NP_308827.1\| putative pectinesterase [Escherichia coli O157:H7], gi\|13360259\|dbj\|BAB... gi\|208816014, gi... - gi\|208816014\|ref\|ZP_03257193.1\| pectinesterase [Escherichia coli O157:H7 str. EC4045], gi\|208732662\|... gi\|208728839, gi... - gi\|208809038\|ref\|ZP_03251375.1\| pectinesterase [Escherichia coli O157:H7 str. EC4206], gi\|208728839\|... gi\|195936761 - gi\|195936761\|ref\|ZP_03082143.1\| putative pectinesterase [Escherichia coli O157:H7 str. EC4024] gi\|189376963, gi... - gi\|189376963\|gb\|EDU95379.1\| pectinesterase [Escherichia coli O157:H7 str. EC508], gi\|168800795\|ref\|Z... gi\|217325387, gi... - gi\|217325387\|ref\|ZP_03441471.1\| pectinesterase [Escherichia coli O157:H7 str. TW14588], gi\|217321608... gi\|209159307, gi... - gi\|209397907\|ref\|YP_002269401.1\| pectinesterase [Escherichia coli O157:H7 str. EC4115], gi\|209159307... gi\|208822154, gi... - gi\|208822154\|ref\|ZP_03262473.1\| pectinesterase [Escherichia coli O157:H7 str. EC4042], gi\|208737639\|...	315.0	[0..1]	[427..1]
gi\|82543219, gi\|... - gi\|82543219\|ref\|YP_407166.1\| putative pectinesterase [Shigella boydii Sb227], gi\|81244630\|gb\|ABB6533...	315.0	[0..1]	[427..1]
gi\|110614321, gi... - gi\|110804773\|ref\|YP_688293.1\| putative pectinesterase [Shigella flexneri 5 str. 8401], gi\|110614321\|...	315.0	[0..1]	[427..1]
gi\|251784240, gi... - gi\|251784240\|ref\|YP_002998544.1\| hypothetical protein B21_00700 [Escherichia coli BL21], gi\|24237651... gi\|254160835, gi... - gi\|254160835\|ref\|YP_003043943.1\| predicted pectinesterase [Escherichia coli B str. REL606], gi\|25397... gi\|124498310, gi... - gi\|124531889\|ref\|ZP_01701988.1\| Pectinesterase [Escherichia coli B], gi\|124498310\|gb\|EAY45828.1\| Pec... gi\|253774280, gi... - gi\|254287607\|ref\|YP_003053355.1\| predicted pectinesterase [Escherichia coli BL21(DE3)], gi\|253976914... gi\|169755818, gi... - gi\|170020890\|ref\|YP_001725844.1\| putative pectinesterase [Escherichia coli ATCC 8739], gi\|169755818\|... gi\|194421319, gi... - gi\|83584844\|ref\|ZP_00923503.1\| COG4677: Pectin methylesterase [Escherichia coli 101-1], gi\|194439767...	315.0	[0..1]	[427..1]
gi\|8671350 - gi\|8671350\|emb\|CAB95025.1\| pectin methylesterase [Nicotiana tabacum]	314.0	[0..2]	[426..206]
gi\|29602797 - gi\|29602797\|gb\|AAO85706.1\| pectin methyl-esterase [Nicotiana benthamiana]	314.0	[0..2]	[426..206]
gi\|24112306, gi\|... - gi\|24112306\|ref\|NP_706816.1\| putative pectinesterase [Shigella flexneri 2a str. 301], gi\|24051164\|gb... gi\|30040665, gi\|... - gi\|30062419\|ref\|NP_836590.1\| putative pectinesterase [Shigella flexneri 2a str. 2457T], gi\|30040665\|...	314.0	[0..1]	[427..1]
gi\|92895238 - gi\|92895238\|gb\|ABE92634.1\| Pectinesterase [Medicago truncatula]	314.0	[0..1]	[425..210]

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Predicted Domain #1

Region A:
Residues: [1-427]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTFSVSRLA LALAFGVTLT ACSSTPPDQR PSDQTAPGTS SRPILSAKEA QNFDAQHYFA  60
   61 SLTPGAAAWN PSPITLPAQP DFVVGPAGTQ GVTHTTIQAA VDAAIIKRTN KRQYIAVMPG 120
  121 EYQGTVYVPA APGGITLYGT GEKPIDVKIG LSLDGGMSPA DWRHDVNPRG KYMPGKPAWY 180
  181 MYDSCQSKRS DSIGVLCSAV FWSQNNGLQL QNLTIENTLG DSVDAGNHPA VALRTDGDQV 240
  241 QINNVNILGR QNTFFVTNSG VQNRLETNRQ PRTLVTNSYI EGDVDIVSGR GAVVFDNTEF 300
  301 RVVNSRTQQE AYVFAPATLS NIYYGFLAVN SRFNAFGDGV AQLGRSLDVD ANTNGQVVIR 360
  361 DSAINEGFNT AKPWADAVIS NRPFAGNTGS VDDNDEIQRN LNDTNYNRMW EYNNRGVGSK 420
  421 VVAEAKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	64.69897
Match:	1xg2A
Description:	Crystal structure of the complex between pectin methylesterase and its inhibitor protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits