YRC Public Data Repository - Protein Structure Prediction

Protein:	YBGA_ECOLI
Organism:	Escherichia coli
Length:	169 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YBGA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|24374897, gi\|... - gi\|24374897\|ref\|NP_718940.1\| hypothetical protein SO_3386 [Shewanella oneidensis MR-1], gi\|24349601\|... SO3386 - conserved hypothetical protein	261.0	[0..1]	[166..154]
gi\|91716192, gi\|... - gi\|91794190\|ref\|YP_563841.1\| hypothetical protein Sden_2839 [Shewanella denitrificans OS217], gi\|917...	261.0	[0..1]	[166..157]
gi\|78690741, gi\|... - gi\|78690741\|ref\|ZP_00855381.1\| conserved hypothetical protein [Shewanella sp. MR-7], gi\|78509874\|gb\|...	260.0	[0..1]	[166..154]
gi\|82404424, gi\|... - gi\|82497598\|ref\|ZP_00883130.1\| conserved hypothetical protein [Shewanella sp. MR-4], gi\|82404424\|gb\|...	260.0	[0..1]	[166..154]
gi\|26987477, gi\|... - gi\|26987477\|ref\|NP_742902.1\| hypothetical protein PP_0741 [Pseudomonas putida KT2440], gi\|24982141\|g...	259.0	[0..1]	[166..156]
gi\|82738460, gi\|... - gi\|82738460\|ref\|ZP_00901292.1\| conserved hypothetical protein [Pseudomonas putida F1], gi\|82714438\|g...	258.0	[0..1]	[166..156]
gi\|82719765, gi\|... - gi\|82742877\|ref\|ZP_00905553.1\| conserved hypothetical protein [Shewanella sp. W3-18-1], gi\|82719765\|... gi\|77814869, gi\|... - gi\|77814869\|ref\|ZP_00814121.1\| Protein of unknown function DUF523 [Shewanella putrefaciens CN-32], g...	258.0	[0..1]	[166..154]
gi\|48730108, gi\|... - gi\|77460955\|ref\|YP_350462.1\| hypothetical protein Pfl01_4734 [Pseudomonas fluorescens Pf0-1], gi\|773...	258.0	[0..1]	[166..155]
gi\|117919613, gi... - gi\|78687306\|ref\|ZP_00852058.1\| conserved hypothetical protein [Shewanella sp. ANA-3], gi\|78504955\|gb...	257.0	[0..1]	[166..154]
gi\|69949249, gi\|... - gi\|69949249\|ref\|ZP_00637309.1\| conserved hypothetical protein [Shewanella frigidimarina NCIMB 400], ...	256.0	[0..1]	[166..157]

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Predicted Domain #1

Region A:
Residues: [1-169]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLQRFDDST LIRIFALHEL HRLKEHGLTR GALLDYHSRY KLVFLAHSQP EYRKLGPFVA  60
   61 DIHQWQNLDD YYNQYRQRVV VLLSHPANPR DHTNVLMHVQ GYFRPHIDST ERQQLAALID 120
  121 SYRRGEQPLL APLMRIKHYM ALYPDAWLSG QRYFELWPRV INLRHSGVL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	58.853872
Match:	PF08349.2
Description:	No description for PF08349.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits