YRC Public Data Repository - Protein Structure Prediction

Protein:	YBG7_PSEAE, Y476...
Organism:	Pseudomonas aeruginosa
Length:	144 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YBG7_PSEAE, Y476....

Description	E-value	Query Range	Subject Range
gi\|116052914, gi... - gi\|53726414\|ref\|ZP_00347572.1\| COG2867: Oligoketide cyclase/lipid transport protein [Pseudomonas aer...	167.0	[0..1]	[144..1]
gi\|95108993, gi\|... - gi\|95108993\|emb\|CAK13689.1\| conserved hypothetical protein [Pseudomonas entomophila L48], gi\|1047800... gi\|95108993 - gi\|95108993\|emb\|CAK13689.1\| conserved hypothetical protein [Pseudomonas entomophila L48]	166.0	[0..1]	[144..1]
gi\|67084600, gi\|... - gi\|67158727\|ref\|ZP_00419588.1\| Protein of unknown function UPF0083 [Azotobacter vinelandii AvOP], gi... gi\|67158727, gi\|... - gi\|67158727\|ref\|ZP_00419588.1\| Protein of unknown function UPF0083 [Azotobacter vinelandii AvOP], re...	166.0	[0..1]	[144..1]
gi\|152989021, gi... - gi\|94417381\|ref\|ZP_01297199.1\| hypothetical protein PaerP_01000698 [Pseudomonas aeruginosa PA7], gi\|...	165.0	[0..1]	[144..1]
gi\|26991415, gi\|... - gi\|26991415\|ref\|NP_746840.1\| cyclase/dehydrase [Pseudomonas putida KT2440], gi\|24986486\|gb\|AAN70304.... gi\|82715289, gi\|... - gi\|82737636\|ref\|ZP_00900483.1\| conserved hypothetical protein [Pseudomonas putida F1], gi\|82715289\|g...	164.0	[0..1]	[142..39]
gi\|70734316, gi\|... - gi\|70734316\|ref\|YP_257956.1\| hypothetical protein PFL_0821 [Pseudomonas fluorescens Pf-5], gi\|683486...	163.0	[0..1]	[144..1]
gi\|77380987, gi\|... - gi\|77456984\|ref\|YP_346489.1\| cyclase/dehydrase [Pseudomonas fluorescens Pf0-1], gi\|77380987\|gb\|ABA72...	163.0	[0..1]	[144..1]
gi\|28854899, gi\|... - gi\|28871647\|ref\|NP_794266.1\| hypothetical protein PSPTO_4513 [Pseudomonas syringae pv. tomato str. D... tr\|Q87WN3\|Q87WN3... - Uncharacterized protein OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=PSPTO_4513 PE=4 SV=1	163.0	[0..1]	[144..14]
gi\|71553776, gi\|... - gi\|71733223\|ref\|YP_276332.1\| oligoketide cyclase/lipid transport protein [Pseudomonas syringae pv. p...	162.0	[0..1]	[144..14]
gi\|23470936, gi\|... - gi\|66047428\|ref\|YP_237269.1\| cyclase/dehydrase [Pseudomonas syringae pv. syringae B728a], gi\|6325813...	159.0	[0..1]	[144..1]

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Predicted Domain #1

Region A:
Residues: [1-144]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTHIQRSAL LPYPARALFD LVNDVKRYPE FLPWCSASQV LEESESLMRA ELTVAKGSLS  60
   61 QRFTTRNVLV PGASIEMNLE NGPFTELHGV WQFKALGEKA CKITLDLTFD YAGPLVKATL 120
  121 GPLFTQAANT MVDAFCQRAK QLYG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.0
Match:	1t17A
Description:	Solution Structure of the 18 kDa Protein CC1736 from Caulobacter crescentus: The Northeast Structural Genomics Consortium Target CcR19
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits