YRC Public Data Repository - Protein Structure Prediction

Protein:	YBFM_ECOLI
Organism:	Escherichia coli
Length:	468 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YBFM_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|94417943 - gi\|94417943\|ref\|ZP_01297759.1\| hypothetical protein PaerP_01000091 [Pseudomonas aeruginosa PA7]	444.0	[0..6]	[468..1]
gi\|82582379, gi\|... - gi\|82582379\|gb\|AAS18314.2\| mutated porin [Pseudomonas aeruginosa], gi\|206558356\|emb\|CAR63745.1\| OprD...	442.0	[0..6]	[468..4]
gi\|84322544 - gi\|84322544\|ref\|ZP_00970629.1\| hypothetical protein Paer2_01006211 [Pseudomonas aeruginosa 2192]	441.0	[0..6]	[468..1]
gi\|77460640, gi\|... - gi\|77460640\|ref\|YP_350147.1\| outer membrane porin [Pseudomonas fluorescens Pf0-1], gi\|77384643\|gb\|AB...	440.0	[0..6]	[468..4]
gi\|107100415 - gi\|107100415\|ref\|ZP_01364333.1\| hypothetical protein PaerPA_01001440 [Pseudomonas aeruginosa PACS2]	439.0	[0..6]	[468..1]
PORD_PSEAE - Porin D OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=oprD PE=1... PORD_PSEAE - Porin D OS=Pseudomonas aeruginosa GN=oprD PE=1 SV=1	436.0	[0..6]	[468..4]
gi\|116048883, gi... - gi\|116048883\|ref\|YP_792316.1\| basic amino acid, basic peptide and imipenem outer membrane porin OprD...	434.0	[0..6]	[468..4]
gi\|254239117, gi... - gi\|84316721\|ref\|ZP_00965187.1\| hypothetical protein PaerC_01005490 [Pseudomonas aeruginosa C3719], g...	433.0	[0..27]	[468..31]

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Predicted Domain #1

Region A:
Residues: [1-468]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTFSGKRST LALAIAGVTA MSGFMAMPEA RAEGFIDDST LTGGIYYWQR ERDRKDVTDG  60
   61 DKYKTNLSHS TWNANLDFQS GYAADMFGLD IAAFTAIEMA ENGDSSHPNE IAFSKSNKAY 120
  121 DEDWSGDKSG ISLYKAAAKF KYGPVWARAG YIQPTGQTLL APHWSFMPGT YQGAEAGANF 180
  181 DYGDAGALSF SYMWTNEYKA PWHLEMDEFY QNDKTTKVDY LHSFGAKYDF KNNFVLEAAF 240
  241 GQAEGYIDQY FAKASYKFDI AGSPLTTSYQ FYGTRDKVDD RSVNDLYDGT AWLQALTFGY 300
  301 RAADVVDLRL EGTWVKADGQ QGYFLQRMTP TYASSNGRLD IWWDNRSDFN ANGEKAVFFG 360
  361 AMYDLKNWNL PGFAIGASYV YAWDAKPATW QSNPDAYYDK NRTIEESAYS LDAVYTIQDG 420
  421 RAKGTMFKLH FTEYDNHSDI PSWGGGYGNI FQDERDVKFM VIAPFTIF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	118.0
Match:	2odjA
Description:	No description for 2odjA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits