YRC Public Data Repository - Protein Structure Prediction

Protein:	YBEL_ECOLI
Organism:	Escherichia coli
Length:	160 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YBEL_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|238786080, gi... - gi\|77957568\|ref\|ZP_00821620.1\| COG0840: Methyl-accepting chemotaxis protein [Yersinia bercovieri ATC...	245.0	[0..1]	[160..1]
gi\|77962178 - gi\|77962178\|ref\|ZP_00826002.1\| COG0840: Methyl-accepting chemotaxis protein [Yersinia mollaretii ATC...	244.0	[0..1]	[160..1]
gi\|238791647, gi... - gi\|77979040\|ref\|ZP_00834462.1\| COG0840: Methyl-accepting chemotaxis protein [Yersinia intermedia ATC...	242.0	[0..1]	[160..1]
gi\|238790772, gi... - gi\|77973038\|ref\|ZP_00828591.1\| COG0563: Adenylate kinase and related kinases [Yersinia frederiksenii...	240.0	[0..1]	[160..1]
gi\|22125088, gi\|... - gi\|22125088\|ref\|NP_668511.1\| hypothetical protein y1185 [Yersinia pestis KIM], gi\|21957943\|gb\|AAM847... gi\|45435791, gi\|... - gi\|45440932\|ref\|NP_992471.1\| hypothetical protein YP_1102 [Yersinia pestis biovar Microtus str. 9100...	239.0	[0..1]	[160..7]
gi\|51595451, gi\|... - gi\|51595451\|ref\|YP_069642.1\| hypothetical protein YPTB1104 [Yersinia pseudotuberculosis IP 32953], g... gi\|25359169 - pir\|\|AG0318 conserved hypothetical protein YPO2611 [imported] - Yersinia pestis (strain CO92) gi\|152959675, gi... - gi\|77632067\|ref\|ZP_00794653.1\| COG0840: Methyl-accepting chemotaxis protein [Yersinia pseudotubercul... gi\|16122824, gi\|... - gi\|218929692\|ref\|YP_002347567.1\| hypothetical protein YPO2611 [Yersinia pestis CO92], gi\|16122824\|re... Q66DE2\|Q66DE2_YERPS - Putative uncharacterized protein - Yersinia pseudotuberculosis gi\|167468414 - gi\|167468414\|ref\|ZP_02333118.1\| hypothetical protein YpesF_11049 [Yersinia pestis FV-1] gi\|167057702, gi... - gi\|167423532\|ref\|ZP_02315285.1\| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis s... gi\|186894482, gi... - gi\|186894482\|ref\|YP_001871594.1\| hypothetical protein YPTS_1161 [Yersinia pseudotuberculosis PB1/+],... gi\|170025235, gi... - gi\|170025235\|ref\|YP_001721740.1\| hypothetical protein YPK_3014 [Yersinia pseudotuberculosis YPIII], ... gi\|89103085, gi\|... - gi\|89103085\|ref\|ZP_01175679.1\| COG0840: Methyl-accepting chemotaxis protein [Yersinia pestis biovar ... gi\|108780392, gi... - gi\|108808479\|ref\|YP_652395.1\| hypothetical protein YPA_2486 [Yersinia pestis Antiqua], gi\|108780392\|... gi\|108811260, gi... - gi\|229901498\|ref\|ZP_04516620.1\| conserved protein [Yersinia pestis Nepal516], gi\|229681427\|gb\|EEO775... gi\|165925191, gi... - gi\|165925191\|ref\|ZP_02221023.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|149365488, gi... - gi\|149365488\|ref\|ZP_01887523.1\| hypothetical protein YPE_0653 [Yersinia pestis CA88-4125], gi\|149291... gi\|145599905, gi... - gi\|145599905\|ref\|YP_001163981.1\| hypothetical protein YPDSF_2642 [Yersinia pestis Pestoides F], gi\|1... gi\|166212438, gi... - gi\|166212438\|ref\|ZP_02238473.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|165992623, gi... - gi\|166008241\|ref\|ZP_02229139.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|229694524, gi... - gi\|229838158\|ref\|ZP_04458317.1\| conserved protein [Yersinia pestis biovar Orientalis str. PEXU2], gi... gi\|167422503, gi... - gi\|167422503\|ref\|ZP_02314256.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|229700873, gi... - gi\|229895950\|ref\|ZP_04511120.1\| conserved protein [Yersinia pestis Pestoides A], gi\|229700873\|gb\|EEO... gi\|167398366, gi... - gi\|167398366\|ref\|ZP_02303890.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|229688279, gi... - gi\|229898731\|ref\|ZP_04513876.1\| conserved protein [Yersinia pestis biovar Orientalis str. India 195]...	238.0	[0..1]	[160..1]
gi\|162420716, gi... - gi\|77636549\|ref\|ZP_00798622.1\| COG0563: Adenylate kinase and related kinases [Yersinia pestis Angola...	238.0	[0..1]	[160..1]
gi\|187733264, gi... - gi\|75175891\|ref\|ZP_00696078.1\| COG0711: F0F1-type ATP synthase, subunit b [Shigella boydii BS512], g...	234.0	[0..1]	[160..1]
gi\|157160138, gi... - gi\|75194826\|ref\|ZP_00704896.1\| COG2433: Uncharacterized conserved protein [Escherichia coli HS], gi\|...	234.0	[0..1]	[160..1]
gi\|193063317, gi... - gi\|75258621\|ref\|ZP_00730028.1\| COG2433: Uncharacterized conserved protein [Escherichia coli E22], gi...	234.0	[0..1]	[160..1]

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Predicted Domain #1

Region A:
Residues: [1-160]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKVAQYYRE LVASLSERLR NGERDIDALV EQARERVIKT GELTRTEVDE LTRAVRRDLE  60
   61 EFAMSYEESL KEESDSVFMR VIKESLWQEL ADITDKTQLE WREVFQDLNH HGVYHSGEVV 120
  121 GLGNLVCEKC HFHLPIYTPE VLTLCPKCGH DQFQRRPFEP

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	106.79588
Match:	PF07295.2
Description:	No description for PF07295.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits