YRC Public Data Repository - Protein Structure Prediction

Protein:	YBEB_ECOLI
Organism:	Escherichia coli
Length:	105 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YBEB_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|83368561, gi\|... - gi\|83368561\|ref\|ZP_00913423.1\| Iojap-related protein [Rhodobacter sphaeroides ATCC 17025], gi\|833616...	163.0	[0..2]	[104..51]
gi\|89348533, gi\|... - gi\|89362611\|ref\|ZP_01200416.1\| Iojap-related protein [Xanthobacter autotrophicus Py2], gi\|89348533\|g...	158.0	[0..2]	[105..35]
gi\|78517631, gi\|... - gi\|78694515\|ref\|ZP_00859028.1\| Iojap-related protein [Bradyrhizobium sp. BTAi1], gi\|78517631\|gb\|EAP3...	158.0	[0..2]	[105..36]
gi\|150959030, gi... - gi\|94417062\|ref\|ZP_01296884.1\| hypothetical protein PaerP_01001258 [Pseudomonas aeruginosa PA7], gi\|...	157.0	[0..1]	[104..1]
gi\|49074330 - gi\|49074330\|gb\|AAT49396.1\| PA4005 [synthetic construct]	157.0	[0..1]	[104..1]
gi\|11348130 - pir\|\|A83147 conserved hypothetical protein PA4005 [imported] - Pseudomonas aeruginosa (strain PAO1) gi\|126196067, gi... - gi\|84325137\|ref\|ZP_00973177.1\| COG0799: Uncharacterized homolog of plant Iojap protein [Pseudomonas ... IOJAP_PSEAB - Ribosomal silencing factor RsfS OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=rsfS PE=1 SV=1 gi\|218889714, gi... - gi\|218889714\|ref\|YP_002438578.1\| hypothetical protein PLES_09711 [Pseudomonas aeruginosa LESB58], gi... gi\|15599200, gi\|... - gi\|9950197\|gb\|AAG07392.1\|AE004817_16 conserved hypothetical protein [Pseudomonas aeruginosa PAO1], g... gi\|107103520 - gi\|107103520\|ref\|ZP_01367438.1\| hypothetical protein PaerPA_01004590 [Pseudomonas aeruginosa PACS2] gi\|126168828, gi... - gi\|84319224\|ref\|ZP_00967625.1\| COG0799: Uncharacterized homolog of plant Iojap protein [Pseudomonas ...	156.0	[0..1]	[104..1]
gi\|83746485, gi\|... - gi\|83746485\|ref\|ZP_00943536.1\| iojap protein family [Ralstonia solanacearum UW551], gi\|83726816\|gb\|E...	154.0	[0..1]	[104..32]
gi\|11360829 - pir\|\|A82591 conserved hypothetical protein XF2180 [imported] - Xylella fastidiosa (strain 9a5c) gi\|9107320, gi\|1... - gi\|9107320\|gb\|AAF84979.1\|AE004031_11 conserved hypothetical protein [Xylella fastidiosa 9a5c], gi\|15...	153.0	[0..6]	[105..33]
gi\|89052868, gi\|... - gi\|89052868\|ref\|YP_508319.1\| Iojap-related protein [Jannaschia sp. CCS1], gi\|88862417\|gb\|ABD53294.1\|...	153.0	[0..2]	[104..35]
gi\|56676878, gi\|... - gi\|56695141\|ref\|YP_165488.1\| iojap-related protein [Ruegeria pomeroyi DSS-3], gi\|56676878\|gb\|AAV9354...	153.0	[0..2]	[104..16]

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Predicted Domain #1

Region A:
Residues: [1-105]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQGKALQDFV IDKIDDLKGQ DIIALDVQGK SSITDCMIIC TGTSSRHVMS IADHVVQESR  60
   61 AAGLLPLGVE GENSADWIVV DLGDVIVHVM QEESRRLYEL EKLWS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.39794
Match:	2o5aA
Description:	No description for 2o5aA was found.

Predicted functions:

Term	Confidence	Notes
transferase activity, transferring phosphorus-containing groups	0.123535769188618	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: