YRC Public Data Repository - Protein Structure Prediction

Protein:	YBDN_ECOLI
Organism:	Escherichia coli
Length:	406 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YBDN_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|192930966, gi... - gi\|75258659\|ref\|ZP_00730066.1\| COG3969: Predicted phosphoadenosine phosphosulfate sulfotransferase [...	429.0	[0..1]	[406..1]
gi\|191167349, gi... - gi\|75229511\|ref\|ZP_00716058.1\| COG3969: Predicted phosphoadenosine phosphosulfate sulfotransferase [... gi\|209400360, gi... - gi\|209400360\|ref\|YP_002269237.1\| IbrA protein [Escherichia coli O157:H7 str. EC4115], gi\|209161760\|g... gi\|217326349, gi... - gi\|217326349\|ref\|ZP_03442433.1\| IbrA protein [Escherichia coli O157:H7 str. TW14588], gi\|217322570\|g... gi\|218553146, gi... - gi\|218553146\|ref\|YP_002386059.1\| immunoglobulin-binding regulator [Escherichia coli IAI1], gi\|218359... gi\|218694044, gi... - gi\|218694044\|ref\|YP_002401711.1\| immunoglobulin-binding regulator [Escherichia coli 55989], gi\|21835... gi\|187769728, gi... - gi\|187769728\|gb\|EDU33572.1\| phosphoadenosine phosphosulfate reductase family protein [Escherichia co... gi\|168779090, gi... - gi\|189003064\|gb\|EDU72050.1\| phosphoadenosine phosphosulfate reductase family protein [Escherichia co... gi\|189373575, gi... - gi\|189373575\|gb\|EDU91991.1\| phosphoadenosine phosphosulfate reductase family protein [Escherichia co... gi\|168798160, gi... - gi\|189379327\|gb\|EDU97743.1\| phosphoadenosine phosphosulfate reductase family protein [Escherichia co... gi\|195936151 - gi\|195936151\|ref\|ZP_03081533.1\| hypothetical protein EscherichcoliO157_06751 [Escherichia coli O157:... gi\|208727683, gi... - gi\|208807882\|ref\|ZP_03250219.1\| IbrA protein [Escherichia coli O157:H7 str. EC4206], gi\|208727683\|gb... gi\|208814940, gi... - gi\|208814940\|ref\|ZP_03256119.1\| IbrA protein [Escherichia coli O157:H7 str. EC4045], gi\|208731588\|gb... gi\|208823126, gi... - gi\|208823126\|ref\|ZP_03263444.1\| IbrA protein [Escherichia coli O157:H7 str. EC4042], gi\|208737319\|gb... gi\|168747730, gi... - gi\|188017693\|gb\|EDU55815.1\| phosphoadenosine phosphosulfate reductase family protein [Escherichia co... gi\|189358023, gi... - gi\|189358023\|gb\|EDU76442.1\| phosphoadenosine phosphosulfate reductase family protein [Escherichia co... gi\|189369169, gi... - gi\|189369169\|gb\|EDU87585.1\| phosphoadenosine phosphosulfate reductase family protein [Escherichia co... gi\|189360883, gi... - gi\|189360883\|gb\|EDU79302.1\| phosphoadenosine phosphosulfate reductase family protein [Escherichia co... gi\|15829895, gi\|... - gi\|15829895\|ref\|NP_308668.1\| hypothetical protein ECs0641 [Escherichia coli O157:H7], gi\|13360099\|db... gi\|15829895, gi\|... - gi\|15829895\|ref\|NP_308668.1\| hypothetical protein ECs0641 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|254591170, gi... - gi\|254791770\|ref\|YP_003076607.1\| hypothetical protein ECSP_0657 [Escherichia coli O157:H7 str. TW143... gi\|209777434, gi... - pir\|\|A99709 hypothetical protein ECs0641 [imported] - Escherichia coli (strain O157:H7, substrain R...	428.0	[0..1]	[406..1]
gi\|157157258, gi... - gi\|75189643\|ref\|ZP_00702910.1\| COG3969: Predicted phosphoadenosine phosphosulfate sulfotransferase [...	427.0	[0..1]	[406..1]
gi\|110640834, gi... - gi\|110640834\|ref\|YP_668562.1\| hypothetical protein ECP_0635 [Escherichia coli 536], gi\|110342426\|gb\|... gi\|170517735, gi... - gi\|170680017\|ref\|YP_001742721.1\| phosphoadenosine phosphosulfate reductase family protein [Escherich... gi\|117622824, gi... - gi\|117622824\|ref\|YP_851737.1\| hypothetical protein APECO1_1447 [Escherichia coli APEC O1], gi\|115511... gi\|237707423, gi... - gi\|237707423\|ref\|ZP_04537904.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|75240761, gi\|... - gi\|75240761\|ref\|ZP_00724668.1\| COG3969: Predicted phosphoadenosine phosphosulfate sulfotransferase [... gi\|218364312, gi... - gi\|218557543\|ref\|YP_002390456.1\| immunoglobulin-binding regulator [Escherichia coli S88], gi\|2183643... gi\|218688428, gi... - gi\|218688428\|ref\|YP_002396640.1\| immunoglobulin-binding regulator [Escherichia coli ED1a], gi\|218425...	427.0	[0..1]	[406..1]
gi\|12513498, gi\|... - gi\|15800317\|ref\|NP_286329.1\| hypothetical protein Z0746 [Escherichia coli O157:H7 EDL933], gi\|125134... gi\|25340093 - pir\|\|E85559 hypothetical protein ybdN [imported] - Escherichia coli (strain O157:H7, substrain EDL9...	427.0	[0..1]	[406..1]
gi\|188495867, gi... - gi\|75514698\|ref\|ZP_00736953.1\| COG3969: Predicted phosphoadenosine phosphosulfate sulfotransferase [... gi\|124530197, gi... - gi\|124530197\|ref\|ZP_01700946.1\| phosphoadenosine phosphosulfate reductase [Escherichia coli B], gi\|1... gi\|192957574, gi... - gi\|75236586\|ref\|ZP_00720674.1\| COG3969: Predicted phosphoadenosine phosphosulfate sulfotransferase [... gi\|194423627, gi... - gi\|83586961\|ref\|ZP_00925591.1\| COG3969: Predicted phosphoadenosine phosphosulfate sulfotransferase [... gi\|170021038, gi... - gi\|170021038\|ref\|YP_001725992.1\| phosphoadenosine phosphosulfate reductase [Escherichia coli ATCC 87...	426.0	[0..1]	[406..1]
gi\|157065779, gi... - gi\|75194788\|ref\|ZP_00704858.1\| COG3969: Predicted phosphoadenosine phosphosulfate sulfotransferase [...	426.0	[0..1]	[406..1]
gi\|227838502, gi... - gi\|227884416\|ref\|ZP_04002221.1\| phosphoadenosine phosphosulfate reductase [Escherichia coli 83972], ... gi\|26246582, gi\|... - gi\|26246582\|ref\|NP_752621.1\| hypothetical protein c0690 [Escherichia coli CFT073], gi\|26106981\|gb\|AA...	425.0	[0..1]	[406..1]
gi\|91209650, gi\|... - gi\|91209650\|ref\|YP_539636.1\| hypothetical protein UTI89_C0605 [Escherichia coli UTI89], gi\|91071224\|...	425.0	[0..1]	[406..1]
gi\|194419092, gi... - gi\|83570431\|ref\|ZP_00921876.1\| COG3969: Predicted phosphoadenosine phosphosulfate sulfotransferase [...	423.0	[0..1]	[406..1]

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Predicted Domain #1

Region A:
Residues: [1-406]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIYKIPLPL NILEAARERI TWTLNTLPRV CVSFSGGKDS GLMLHLTAEL ARQMGKKICV  60
   61 LFIDWEAQFS CTINYVQSLR ELYTDVIEEF YWVALPLTTQ NSLSQYQPEW QCWEPDVEWV 120
  121 RQPPQDAITD PDFFCFYQPG MTFEQFVREF AEWFSQKRPA AMMIGIRADE SYNRFVAIAS 180
  181 LNKQRFADDK PWTTAAPGGH SWYIYPIYDW KVADIWTWYA NHQSLCNPLY NLMYQAGVPL 240
  241 RHMRICEPFG PEQRQGLWLY HVIEPDRWAA MCARVSGVKS GGIYAGHDNH FYGHRKILKP 300
  301 EHLDWQEYAL LLLNSMPEKT AEHYRNKIAI YLHWYQKKGI EVPQTQQGDI GAKDIPSWRR 360
  361 ICKVLLNNDY WCRALSFSPT KSKNYQRYNE RIKGKRQEWG ILCNND

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	62.69897
Match:	1zunA
Description:	Crystal Structure of a GTP-Regulated ATP Sulfurylase Heterodimer from Pseudomonas syringae
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.062439821475123	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: