YRC Public Data Repository - Protein Structure Prediction

Protein:	YBCH_ECOLI
Organism:	Escherichia coli
Length:	296 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YBCH_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|194418967, gi... - gi\|83570246\|ref\|ZP_00921692.1\| hypothetical protein Sdys1_01001533 [Shigella dysenteriae 1012], gi\|1...	442.0	[0..1]	[296..1]
gi\|218694001, gi... - gi\|218694001\|ref\|YP_002401668.1\| hypothetical protein EC55989_0552 [Escherichia coli 55989], gi\|2183... gi\|209911073, gi... - gi\|209917814\|ref\|YP_002291898.1\| hypothetical protein ECSE_0623 [Escherichia coli SE11], gi\|20991107... gi\|75228689, gi\|... - gi\|75228689\|ref\|ZP_00715306.1\| hypothetical protein EcolB7_01002991 [Escherichia coli B7A], gi\|19116...	441.0	[0..1]	[296..1]
gi\|15829853, gi\|... - gi\|15829853\|ref\|NP_308626.1\| hypothetical protein ECs0599 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|209777774, gi... - pir\|\|B85554 hypothetical protein ybcH [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|254591125, gi... - gi\|254791725\|ref\|YP_003076562.1\| hypothetical protein ECSP_0612 [Escherichia coli O157:H7 str. TW143... gi\|12513440, gi\|... - gi\|15800274\|ref\|NP_286286.1\| hypothetical protein Z0697 [Escherichia coli O157:H7 EDL933], gi\|125134... gi\|15829853, gi\|... - gi\|15829853\|ref\|NP_308626.1\| hypothetical protein ECs0599 [Escherichia coli O157:H7], gi\|13360057\|db... gi\|208814985, gi... - gi\|208814985\|ref\|ZP_03256164.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|208737065, gi... - gi\|208822872\|ref\|ZP_03263190.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|209160536, gi... - gi\|209399136\|ref\|YP_002269191.1\| hypothetical protein ECH74115_0640 [Escherichia coli O157:H7 str. E... gi\|217320798, gi... - gi\|217324577\|ref\|ZP_03440661.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|189373720, gi... - gi\|189373720\|gb\|EDU92136.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|168798112, gi... - gi\|189379232\|gb\|EDU97648.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|195936104 - gi\|195936104\|ref\|ZP_03081486.1\| hypothetical protein EscherichcoliO157_06516 [Escherichia coli O157:... gi\|208808108, gi... - gi\|208808108\|ref\|ZP_03250445.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|168760299, gi... - gi\|189369080\|gb\|EDU87496.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|189360902, gi... - gi\|189360902\|gb\|EDU79321.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|187769761, gi... - gi\|187769761\|gb\|EDU33605.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... gi\|168779041, gi... - gi\|189003034\|gb\|EDU72020.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|188017652, gi... - gi\|188017652\|gb\|EDU55774.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... gi\|189358056, gi... - gi\|189358056\|gb\|EDU76475.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g...	441.0	[0..1]	[296..1]
gi\|73854576, gi\|... - gi\|74311099\|ref\|YP_309518.1\| hypothetical protein SSON_0513 [Shigella sonnei Ss046], gi\|73854576\|gb\|...	441.0	[0..1]	[296..1]
gi\|170021082, gi... - gi\|170021082\|ref\|YP_001726036.1\| hypothetical protein EcolC_3085 [Escherichia coli ATCC 8739], gi\|16... gi\|188492693, gi... - gi\|75514655\|ref\|ZP_00736910.1\| hypothetical protein Ecol5_01001430 [Escherichia coli 53638], gi\|1884... gi\|254160637, gi... - gi\|254160637\|ref\|YP_003043745.1\| hypothetical protein ECB_00521 [Escherichia coli B str. REL606], gi... gi\|124499947, gi... - gi\|124529347\|ref\|ZP_01700381.1\| conserved hypothetical protein [Escherichia coli B], gi\|124499947\|gb...	441.0	[0..1]	[296..1]
gi\|157154840, gi... - gi\|75189599\|ref\|ZP_00702866.1\| hypothetical protein EcolE_01002886 [Escherichia coli E24377A], gi\|15...	440.0	[0..1]	[296..1]
gi\|75258701, gi\|... - gi\|75258701\|ref\|ZP_00730108.1\| hypothetical protein EcolE2_01001647 [Escherichia coli E22], gi\|19306... gi\|193069081, gi... - gi\|75236543\|ref\|ZP_00720631.1\| hypothetical protein EcolE1_01002051 [Escherichia coli E110019], gi\|1... gi\|75210809, gi\|... - gi\|75210809\|ref\|ZP_00710941.1\| hypothetical protein EcolB_01002120 [Escherichia coli B171], gi\|19442... gi\|218359870, gi... - gi\|218553102\|ref\|YP_002386015.1\| hypothetical protein ECIAI1_0540 [Escherichia coli IAI1], gi\|218359... gi\|195182775 - gi\|195182775\|dbj\|BAG66356.1\| predicted protein [Escherichia coli O111:H-]	438.0	[0..1]	[296..1]
gi\|110804547, gi... - gi\|110804547\|ref\|YP_688067.1\| hypothetical protein SFV_0500 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|30040263, gi\|... - gi\|30062019\|ref\|NP_836190.1\| hypothetical protein S0476 [Shigella flexneri 2a str. 2457T], gi\|300402...	438.0	[0..1]	[296..1]
gi\|24111905, gi\|... - gi\|24111905\|ref\|NP_706415.1\| hypothetical protein SF0468 [Shigella flexneri 2a str. 301], gi\|2405070...	436.0	[0..1]	[296..1]
gi\|218557507, gi... - gi\|218557507\|ref\|YP_002390420.1\| hypothetical protein ECS88_0603 [Escherichia coli S88], gi\|21836427... gi\|115511914, gi... - gi\|117622790\|ref\|YP_851703.1\| hypothetical protein APECO1_1481 [Escherichia coli APEC O1], gi\|115511... gi\|91209612, gi\|... - gi\|91209612\|ref\|YP_539598.1\| hypothetical protein UTI89_C0567 [Escherichia coli UTI89], gi\|91071186\|...	431.0	[0..1]	[296..1]

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Predicted Domain #1

Region A:
Residues: [1-202]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKFIFVLLT LLLVSPFSFA MKGIIWQPQN RDSQVTDTQW QGLMSQLRLQ GFDTLVLQWT  60
   61 RYGDAFTQPE QRTLLFKRAA AAQQAGLKLI VGLNADPEFF MHQKQSSAAL ESYLNRLLAA 120
  121 DLQQARLWSA APGITPDGWY ISAEIDDLNW RSEAARQPLL TWLNNAQRLI SDVSAKPVYI 180
  181 SSFFAGNMSP DGYRQLLEHV KA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.533	N/A	N/A	a.45.1	Glutathione S-transferase (GST), C-terminal domain
View	Download	0.502	N/A	N/A	a.26.1	4-helical cytokines
View	Download	0.496	N/A	N/A	d.110.1	Profilin (actin-binding protein)
View	Download	0.487	N/A	N/A	c.1.15	Xylose isomerase-like
View	Download	0.443	N/A	N/A	c.48.1	TK C-terminal domain-like

Predicted Domain #2

Region A:
Residues: [203-296]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TGVNVWVQDG SGVDKLTAEQ RERYLQASAD CQSPAPASGV VYELFVAGKG KTFTAKPKPD  60
   61 AEIASLLAKR SSCGKDTLYF SLRYLPVAHG ILEY

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.719	N/A	N/A	c.25.1	Ferredoxin reductase-like, C-terminal NADP-linked domain
View	Download	0.685	N/A	N/A	c.48.1	TK C-terminal domain-like
View	Download	0.682	N/A	N/A	c.23.6	Cobalamin (vitamin B12)-binding domain
View	Download	0.663	N/A	N/A	c.23.6	Cobalamin (vitamin B12)-binding domain
View	Download	0.642	N/A	N/A	c.31.1	DHS-like NAD/FAD-binding domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits