YRC Public Data Repository - Protein Structure Prediction

Protein:	YBAQ_ECOLI
Organism:	Escherichia coli
Length:	113 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YBAQ_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|13359993, gi\|... - gi\|15829790\|ref\|NP_308563.1\| hypothetical protein ECs0536 [Escherichia coli O157:H7], gi\|13359993\|db... gi\|189402022, gi... - gi\|189402022\|ref\|ZP_02779597.2\| addiction module antidote protein, HigA family [Escherichia coli O15... gi\|25298809, gi\|... - pir\|\|D85546 hypothetical protein ybaQ [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|189010060, gi... - gi\|189010060\|ref\|ZP_02803986.2\| addiction module antidote protein, HigA family [Escherichia coli O15... gi\|188017595, gi... - gi\|188024621\|ref\|ZP_02772861.2\| addiction module antidote protein, HigA family [Escherichia coli O15... gi\|12513356, gi\|... - gi\|15800212\|ref\|NP_286224.1\| hypothetical protein Z0602 [Escherichia coli O157:H7 EDL933], gi\|125133... gi\|187769730, gi... - gi\|187775986\|ref\|ZP_02799559.2\| addiction module antidote protein, HigA family [Escherichia coli O15... gi\|189405631, gi... - gi\|189405631\|ref\|ZP_02823056.2\| addiction module antidote protein, HigA family [Escherichia coli O15... gi\|13359993, gi\|... - gi\|15829790\|ref\|NP_308563.1\| hypothetical protein ECs0536 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|189404840, gi... - gi\|189404840\|ref\|ZP_02811344.2\| addiction module antidote protein, HigA family [Escherichia coli O15... gi\|189369203, gi... - gi\|189403830\|ref\|ZP_02785367.2\| addiction module antidote protein, HigA family [Escherichia coli O15... gi\|189403104, gi... - gi\|189403104\|ref\|ZP_02793447.2\| addiction module antidote protein, HigA family [Escherichia coli O15... gi\|209400650, gi... - gi\|209400650\|ref\|YP_002269134.1\| addiction module antidote protein, HigA family [Escherichia coli O1... gi\|208822829, gi... - gi\|208822829\|ref\|ZP_03263147.1\| addiction module antidote protein, HigA family [Escherichia coli O15... gi\|208815672, gi... - gi\|208815672\|ref\|ZP_03256851.1\| addiction module antidote protein, HigA family [Escherichia coli O15... gi\|208729389, gi... - gi\|208809588\|ref\|ZP_03251925.1\| addiction module antidote protein, HigA family [Escherichia coli O15... gi\|217325694, gi... - gi\|217325694\|ref\|ZP_03441778.1\| addiction module antidote protein, HigA family [Escherichia coli O15...	104.0	[0..1]	[113..19]
gi\|157081360, gi... - gi\|157159330\|ref\|YP_001461672.1\| addiction module antidote protein [Escherichia coli E24377A], gi\|15... gi\|81244388, gi\|... - gi\|82542977\|ref\|YP_406924.1\| hypothetical protein SBO_0385 [Shigella boydii Sb227], gi\|81244388\|gb\|A... gi\|187730692, gi... - gi\|187730692\|ref\|YP_001879195.1\| addiction module antidote protein, HigA family [Shigella boydii CDC...	103.0	[0..1]	[113..19]
gi\|253774527, gi... - gi\|253774527\|ref\|YP_003037358.1\| plasmid maintenance system antidote protein, XRE family [Escherichi... gi\|49176027, gi\|... - gi\|49176027\|ref\|NP_415016.3\| conserved protein, DNA-binding domain [Escherichia coli K12], gb\|AAC735... gi\|7428907, gi\|1... - gi\|7428907\|pir\|\|B64779 hypothetical protein b0483 - Escherichia coli (strain K-12), gi\|1773165\|gb\|AA...	102.0	[0..1]	[113..19]
gi\|75189551 - gi\|75189551\|ref\|ZP_00702818.1\| COG3093: Plasmid maintenance system antidote protein [Escherichia col... gi\|75177570 - gi\|75177570\|ref\|ZP_00697651.1\| COG3093: Plasmid maintenance system antidote protein [Shigella boydii... gi\|194418957, gi... - gi\|83570183\|ref\|ZP_00921629.1\| COG3093: Plasmid maintenance system antidote protein [Shigella dysent...	101.0	[0..1]	[113..1]
gi\|74316690, gi\|... - gi\|74316690\|ref\|YP_314430.1\| plasmid maintenance system antidote protein [Thiobacillus denitrificans...	101.0	[0..3]	[105..4]
gi\|83587062, gi\|... - gi\|83587062\|ref\|ZP_00925692.1\| COG3093: Plasmid maintenance system antidote protein [Escherichia col...	101.0	[0..1]	[113..1]
gi\|75194703 - gi\|75194703\|ref\|ZP_00704773.1\| COG3093: Plasmid maintenance system antidote protein [Escherichia col...	100.0	[0..1]	[113..1]
gi\|93455338, gi\|... - gi\|94264227\|ref\|ZP_01288022.1\| Helix-turn-helix motif [delta proteobacterium MLMS-1], gi\|93455338\|gb...	100.0	[0..3]	[105..1]
gi\|67926210, gi\|... - gi\|67926210\|ref\|ZP_00519429.1\| Helix-turn-helix motif [Crocosphaera watsonii WH 8501], gi\|67851943\|g...	100.0	[0..3]	[104..5]

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Predicted Domain #1

Region A:
Residues: [1-113]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQATRKPTT PGDILLYEYL EPLDLKINEL AELLHVHRNS VSALINNNRK LTTEMAFRLA  60
   61 KVFDTTVDFW LNLQAAVDLW EVENNMRTQE ELGRIETVAE YLARREERAK KVA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.39794
Match:	2ebyA
Description:	No description for 2ebyA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits