YRC Public Data Repository - Protein Structure Prediction

Protein:	YBAP_SHIFL
Organism:	Shigella flexneri
Length:	264 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YBAP_SHIFL.

Description	E-value	Query Range	Subject Range
gi\|227884505, gi... - gi\|227884505\|ref\|ZP_04002310.1\| GumN family protein [Escherichia coli 83972], gi\|227838591\|gb\|EEJ490... gi\|26246497, gi\|... - gi\|26246497\|ref\|NP_752536.1\| hypothetical protein c0602 [Escherichia coli CFT073], gi\|26106895\|gb\|AA...	272.0	[0..1]	[264..1]
gi\|83570184, gi\|... - gi\|83570184\|ref\|ZP_00921630.1\| COG3735: Uncharacterized protein conserved in bacteria [Shigella dyse...	270.0	[0..1]	[264..1]
gi\|238899769, gi... - gi\|238899769\|ref\|YP_002925565.1\| hypothetical protein BWG_0363 [Escherichia coli BW2952], gi\|2388602... gi\|242376263, gi... - gi\|251783990\|ref\|YP_002998294.1\| hypothetical protein B21_00438 [Escherichia coli BL21], gi\|24237626... gi\|253774528, gi... - gi\|254287355\|ref\|YP_003053103.1\| hypothetical protein ECD_00433 [Escherichia coli BL21(DE3)], gi\|253... gi\|253972452, gi... - gi\|254160551\|ref\|YP_003043659.1\| hypothetical protein ECB_00433 [Escherichia coli B str. REL606], gi... gi\|170080067, gi... - gi\|170080067\|ref\|YP_001729387.1\| hypothetical protein ECDH10B_0439 [Escherichia coli str. K-12 subst... gi\|170021130, gi... - gi\|170021130\|ref\|YP_001726084.1\| GumN family protein [Escherichia coli ATCC 8739], gi\|169756058\|gb\|A... gi\|124499291, gi... - gi\|124530266\|ref\|ZP_01700985.1\| GumN family protein [Escherichia coli B], gi\|124499291\|gb\|EAY46782.1... EG13244 - TraB family protein / TraB family protein gi\|30061982, gi\|... - gi\|30061982\|ref\|NP_836153.1\| putative ligase [Shigella flexneri 2a str. 2457T], gi\|30040226\|gb\|AAP15... gi\|110804507, gi... - gi\|110804507\|ref\|YP_688027.1\| putative ligase [Shigella flexneri 5 str. 8401], gi\|110614055\|gb\|ABF02... gi\|83587063, gi\|... - gi\|83587063\|ref\|ZP_00925693.1\| COG3735: Uncharacterized protein conserved in bacteria [Escherichia c... EG13244 - TraB family protein / TraB family protein gi\|85674621, gi\|... - gi\|89107351\|ref\|AP_001131.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... YBAP_ECOLI - Hypothetical protein ybaP - Escherichia coli	270.0	[0..1]	[264..1]
gi\|218557394, gi... - gi\|218557394\|ref\|YP_002390307.1\| hypothetical protein ECS88_0481 [Escherichia coli S88], gi\|21836416... gi\|218425910, gi... - gi\|218688346\|ref\|YP_002396558.1\| hypothetical protein ECED1_0506 [Escherichia coli ED1a], gi\|2184259... gi\|91209558, gi\|... - gi\|91209558\|ref\|YP_539544.1\| putative ligase [Escherichia coli UTI89], gi\|91071132\|gb\|ABE06013.1\| pu... gi\|237707518, gi... - gi\|237707518\|ref\|ZP_04537999.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|117622741, gi... - gi\|117622741\|ref\|YP_851654.1\| putative ligase [Escherichia coli APEC O1], gi\|115511865\|gb\|ABI99939.1...	270.0	[0..1]	[264..1]
gi\|75177571, gi\|... - gi\|75177571\|ref\|ZP_00697652.1\| COG3735: Uncharacterized protein conserved in bacteria [Shigella boyd... gi\|81244387, gi\|... - gi\|82542976\|ref\|YP_406923.1\| putative ligase [Shigella boydii Sb227], gi\|81244387\|gb\|ABB65095.1\| put...	270.0	[0..1]	[264..1]
gi\|192929240, gi... - gi\|75257873\|ref\|ZP_00729351.1\| COG3735: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|193067704, gi... - gi\|75239022\|ref\|ZP_00723004.1\| COG3735: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|75209762, gi\|... - gi\|75209762\|ref\|ZP_00709964.1\| COG3735: Uncharacterized protein conserved in bacteria [Escherichia c...	269.0	[0..1]	[264..1]
gi\|110640745, gi... - gi\|110640745\|ref\|YP_668473.1\| hypothetical protein ECP_0545 [Escherichia coli 536], gi\|110342337\|gb\|... gi\|191173695, gi... - gi\|75238236\|ref\|ZP_00722237.1\| COG3735: Uncharacterized protein conserved in bacteria [Escherichia c...	269.0	[0..1]	[264..1]
gi\|168778978, gi... - gi\|189002847\|gb\|EDU71833.1\| GumN family protein [Escherichia coli O157:H7 str. EC4076], gi\|168778978... gi\|187769790, gi... - gi\|187769790\|gb\|EDU33634.1\| GumN family protein [Escherichia coli O157:H7 str. EC4196], gi\|168774551... gi\|209778268, gi... - pir\|\|C85546 probable ligase ybaP [imported] - Escherichia coli (strain O157:H7, substrain EDL933), ... gi\|168798048, gi... - gi\|189379318\|gb\|EDU97734.1\| GumN family protein [Escherichia coli O157:H7 str. EC508], gi\|168798048\|... gi\|254791665, gi... - gi\|254791665\|ref\|YP_003076502.1\| hypothetical protein ECSP_0549 [Escherichia coli O157:H7 str. TW143... gi\|168786336, gi... - gi\|189373664\|gb\|EDU92080.1\| GumN family protein [Escherichia coli O157:H7 str. EC869], gi\|168786336\|... gi\|12513355, gi\|... - gi\|15800211\|ref\|NP_286223.1\| putative ligase [Escherichia coli O157:H7 EDL933], gi\|12513355\|gb\|AAG54... gi\|168754589, gi... - gi\|189358073\|gb\|EDU76492.1\| GumN family protein [Escherichia coli O157:H7 str. EC4401], gi\|168754589... gi\|15829789, gi\|... - gi\|15829789\|ref\|NP_308562.1\| putative ligase [Escherichia coli O157:H7], gi\|13359992\|dbj\|BAB33958.1\|... gi\|168747840, gi... - gi\|188017626\|gb\|EDU55748.1\| GumN family protein [Escherichia coli O157:H7 str. EC4113], gi\|168747840... gi\|15829789, gi\|... - gi\|15829789\|ref\|NP_308562.1\| putative ligase [Escherichia coli O157:H7 str. Sakai], gi\|13359992\|dbj\|... gi\|168768439, gi... - gi\|189362480\|gb\|EDU80899.1\| GumN family protein [Escherichia coli O157:H7 str. EC4486], gi\|168768439... gi\|189369100, gi... - gi\|189369100\|gb\|EDU87516.1\| GumN family protein [Escherichia coli O157:H7 str. EC4501], gi\|168760361... gi\|217320723, gi... - gi\|217324502\|ref\|ZP_03440586.1\| GumN family protein [Escherichia coli O157:H7 str. TW14588], gi\|2173... gi\|209398745, gi... - gi\|209398745\|ref\|YP_002269133.1\| GumN family protein [Escherichia coli O157:H7 str. EC4115], gi\|2091... gi\|208808096, gi... - gi\|208808096\|ref\|ZP_03250433.1\| GumN family protein [Escherichia coli O157:H7 str. EC4206], gi\|20872... gi\|195936045 - gi\|195936045\|ref\|ZP_03081427.1\| putative ligase [Escherichia coli O157:H7 str. EC4024] gi\|208737207, gi... - gi\|208823014\|ref\|ZP_03263332.1\| GumN family protein [Escherichia coli O157:H7 str. EC4042], gi\|20873... gi\|208815155, gi... - gi\|208815155\|ref\|ZP_03256334.1\| GumN family protein [Escherichia coli O157:H7 str. EC4045], gi\|20873...	269.0	[0..1]	[264..1]
gi\|157160009, gi... - gi\|75194702\|ref\|ZP_00704772.1\| COG3735: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|218350676, gi... - gi\|218693944\|ref\|YP_002401611.1\| hypothetical protein EC55989_0495 [Escherichia coli 55989], gi\|2183... gi\|73854540, gi\|... - gi\|74311063\|ref\|YP_309482.1\| putative ligase [Shigella sonnei Ss046], gi\|73854540\|gb\|AAZ87247.1\| put... gi\|75514605, gi\|... - gi\|75514605\|ref\|ZP_00736860.1\| COG3735: Uncharacterized protein conserved in bacteria [Escherichia c...	269.0	[0..1]	[264..1]
gi\|190902453, gi... - gi\|75229357\|ref\|ZP_00715912.1\| COG3735: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|209917698, gi... - gi\|209917698\|ref\|YP_002291782.1\| putative ligase [Escherichia coli SE11], gi\|209910957\|dbj\|BAG76031....	268.0	[0..1]	[264..1]

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Predicted Domain #1

Region A:
Residues: [1-264]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLLYRVKTL WAALRGNHYT WPAIDITLPG NRHSHLIGSI HMGSHDMAPL PTRLLKKLKN  60
   61 ADALIVEADV STSDTPFANL PACEALEERI SEEQLQNLQH ISQEMGISPS LFSTQPLWQI 120
  121 AMVLQATQAQ KLGLRAEYGI DYQLLQAAKQ QHKPVIELEG AENQIAMLLQ LPDKGLALLD 180
  181 DTLTHWHTNA RLLQQMMSWW LNAPPQNNDI TLPNTFSQSL YDVLMHQRNL AWRDKLRAMP 240
  241 PGRYVVAVGA LHLYGEGNLP QMLR

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.1
Match:	2g5gX
Description:	No description for 2g5gX was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits