YRC Public Data Repository - Protein Structure Prediction

Protein:	YBAP_ECOLI
Organism:	Escherichia coli
Length:	264 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YBAP_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|238788070, gi... - gi\|77974249\|ref\|ZP_00829790.1\| COG3735: Uncharacterized protein conserved in bacteria [Yersinia fred...	236.0	[0..2]	[264..3]
gi\|238729111, gi... - gi\|77979341\|ref\|ZP_00834760.1\| COG3735: Uncharacterized protein conserved in bacteria [Yersinia inte...	235.0	[0..2]	[264..5]
gi\|77631979, gi\|... - gi\|77631979\|ref\|ZP_00794565.1\| COG3735: Uncharacterized protein conserved in bacteria [Yersinia pseu...	234.0	[0..2]	[264..3]
gi\|238720572, gi... - gi\|77962136\|ref\|ZP_00825960.1\| COG3735: Uncharacterized protein conserved in bacteria [Yersinia moll...	233.0	[0..2]	[264..3]
gi\|166204456, gi... - gi\|166214327\|ref\|ZP_02240362.1\| GumN family protein [Yersinia pestis biovar Antiqua str. B42003004],... gi\|167051147, gi... - gi\|167398643\|ref\|ZP_02304167.1\| GumN family protein [Yersinia pestis biovar Antiqua str. UG05-0454],... gi\|166958340, gi... - gi\|167422749\|ref\|ZP_02314502.1\| GumN family protein [Yersinia pestis biovar Orientalis str. MG05-102... gi\|229838688, gi... - gi\|229838688\|ref\|ZP_04458847.1\| conserved protein [Yersinia pestis biovar Orientalis str. PEXU2], gi... gi\|167423474, gi... - gi\|167423474\|ref\|ZP_02315227.1\| GumN family protein [Yersinia pestis biovar Mediaevalis str. K197300... gi\|229701078, gi... - gi\|229896155\|ref\|ZP_04511325.1\| conserved protein [Yersinia pestis Pestoides A], gi\|229701078\|gb\|EEO... gi\|167467927 - gi\|167467927\|ref\|ZP_02332631.1\| GumN family protein [Yersinia pestis FV-1] gi\|229899255, gi... - gi\|229899255\|ref\|ZP_04514398.1\| conserved protein [Yersinia pestis biovar Orientalis str. India 195]... gi\|169751919, gi... - gi\|170025385\|ref\|YP_001721890.1\| GumN family protein [Yersinia pseudotuberculosis YPIII], gi\|1697519... gi\|186697419, gi... - gi\|186894393\|ref\|YP_001871505.1\| GumN family protein [Yersinia pseudotuberculosis PB1/+], gi\|1866974... gi\|165927668, gi... - gi\|165927668\|ref\|ZP_02223500.1\| GumN family protein [Yersinia pestis biovar Orientalis str. F1991016... gi\|166011197, gi... - gi\|166011197\|ref\|ZP_02232095.1\| GumN family protein [Yersinia pestis biovar Antiqua str. E1979001], ... Q66DM3\|Q66DM3_YERPS - Putative uncharacterized protein - Yersinia pseudotuberculosis gi\|21957840, gi\|... - gi\|22124995\|ref\|NP_668418.1\| hypothetical protein y1091 [Yersinia pestis KIM], gi\|21957840\|gb\|AAM846... gi\|77634172, gi\|... - gi\|77634172\|ref\|ZP_00796279.1\| COG3735: Uncharacterized protein conserved in bacteria [Yersinia pest... gi\|25359152 - pir\|\|AF0375 conserved hypothetical protein YPO3087 [imported] - Yersinia pestis (strain CO92) gi\|51595370, gi\|... - gi\|51595370\|ref\|YP_069561.1\| hypothetical protein YPTB1021 [Yersinia pseudotuberculosis IP 32953], g... gi\|45440680, gi\|... - gi\|45440680\|ref\|NP_992219.1\| hypothetical protein YP_0837 [Yersinia pestis biovar Microtus str. 9100... gi\|149291465, gi... - gi\|149365052\|ref\|ZP_01887087.1\| hypothetical protein YPE_0188 [Yersinia pestis CA88-4125], gi\|149291... gi\|16123264, gi\|... - gi\|218930132\|ref\|YP_002348007.1\| hypothetical protein YPO3087 [Yersinia pestis CO92], gi\|16123264\|re... gi\|165916139, gi... - gi\|89103584\|ref\|ZP_01176155.1\| COG3735: Uncharacterized protein conserved in bacteria [Yersinia pest... gi\|145211682, gi... - gi\|145599986\|ref\|YP_001164062.1\| hypothetical protein YPDSF_2725 [Yersinia pestis Pestoides F], gi\|1... gi\|108808574, gi... - gi\|108808574\|ref\|YP_652490.1\| hypothetical protein YPA_2582 [Yersinia pestis Antiqua], gi\|108780487\|... gi\|229681323, gi... - gi\|229901394\|ref\|ZP_04516516.1\| conserved protein [Yersinia pestis Nepal516], gi\|229681323\|gb\|EEO774...	232.0	[0..2]	[264..3]
gi\|238785364, gi... - gi\|77958370\|ref\|ZP_00822404.1\| COG3735: Uncharacterized protein conserved in bacteria [Yersinia berc...	232.0	[0..2]	[264..3]
gi\|227884505, gi... - gi\|227884505\|ref\|ZP_04002310.1\| GumN family protein [Escherichia coli 83972], gi\|227838591\|gb\|EEJ490... gi\|26246497, gi\|... - gi\|26246497\|ref\|NP_752536.1\| hypothetical protein c0602 [Escherichia coli CFT073], gi\|26106895\|gb\|AA...	228.0	[0..1]	[264..1]
gi\|75177571, gi\|... - gi\|75177571\|ref\|ZP_00697652.1\| COG3735: Uncharacterized protein conserved in bacteria [Shigella boyd... gi\|81244387, gi\|... - gi\|82542976\|ref\|YP_406923.1\| putative ligase [Shigella boydii Sb227], gi\|81244387\|gb\|ABB65095.1\| put...	225.0	[0..1]	[264..1]
gi\|83570184, gi\|... - gi\|83570184\|ref\|ZP_00921630.1\| COG3735: Uncharacterized protein conserved in bacteria [Shigella dyse...	225.0	[0..1]	[264..1]
gi\|157160009, gi... - gi\|75194702\|ref\|ZP_00704772.1\| COG3735: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|218350676, gi... - gi\|218693944\|ref\|YP_002401611.1\| hypothetical protein EC55989_0495 [Escherichia coli 55989], gi\|2183... gi\|73854540, gi\|... - gi\|74311063\|ref\|YP_309482.1\| putative ligase [Shigella sonnei Ss046], gi\|73854540\|gb\|AAZ87247.1\| put... gi\|75514605, gi\|... - gi\|75514605\|ref\|ZP_00736860.1\| COG3735: Uncharacterized protein conserved in bacteria [Escherichia c...	225.0	[0..1]	[264..1]

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Predicted Domain #1

Region A:
Residues: [1-264]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLLYRVKTL WAALRGNHYT WPAIDITLPG NRHFHLIGSI HMGSHDMAPL PTRLLKKLKN  60
   61 ADALIVEADV STSDTPFANL PACEALEERI SEEQLQNLQH ISQEMGISPS LFSTQPLWQI 120
  121 AMVLQATQAQ KLGLRAEYGI DYQLLQAAKQ QHKPVIELEG AENQIAMLLQ LPDKGLALLD 180
  181 DTLTHWHTNA RLLQQMMSWW LNAPPQNNDI TLPNTFSQSL YDVLMHQRNL AWRDKLRAMP 240
  241 PGRYVVAVGA LHLYGEGNLP QMLR

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.12
Match:	2g5gX
Description:	No description for 2g5gX was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits