YRC Public Data Repository - Protein Structure Prediction

Protein:	YBAK_ECOLI
Organism:	Escherichia coli
Length:	159 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YBAK_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|190150541, gi... - gi\|190150541\|ref\|YP_001969066.1\| hypothetical protein APP7_1272 [Actinobacillus pleuropneumoniae ser... gi\|32035604 - gi\|32035604\|ref\|ZP_00135525.1\| COG2606: Uncharacterized conserved protein [Actinobacillus pleuropneu... gi\|126208689, gi... - gi\|126208689\|ref\|YP_001053914.1\| hypothetical protein APL_1221 [Actinobacillus pleuropneumoniae L20]...	173.0	[0..1]	[157..1]
gi\|117622740, gi... - gi\|117622740\|ref\|YP_851653.1\| hypothetical protein APECO1_1532 [Escherichia coli APEC O1], gi\|115511... gi\|227884506, gi... - gi\|227884506\|ref\|ZP_04002311.1\| transcriptional regulator [Escherichia coli 83972], gi\|227838592\|gb\|... gi\|237707519, gi... - gi\|237707519\|ref\|ZP_04538000.1\| ybaK [Escherichia sp. 3_2_53FAA], gi\|226898729\|gb\|EEH84988.1\| ybaK [... gi\|26106894, gi\|... - gi\|26246496\|ref\|NP_752535.1\| hypothetical protein c0601 [Escherichia coli CFT073], gi\|26106894\|gb\|AA... gi\|110342336, gi... - gi\|110640744\|ref\|YP_668472.1\| hypothetical protein ECP_0544 [Escherichia coli 536], gi\|110342336\|gb\|... gi\|190906048, gi... - gi\|75238235\|ref\|ZP_00722236.1\| COG2606: Uncharacterized conserved protein [Escherichia coli F11], gi... gi\|218425909, gi... - gi\|218688345\|ref\|YP_002396557.1\| hypothetical protein ECED1_0505 [Escherichia coli ED1a], gi\|2184259... gi\|218557393, gi... - gi\|218557393\|ref\|YP_002390306.1\| hypothetical protein ECS88_0480 [Escherichia coli S88], gi\|21836416... gi\|91209557, gi\|... - gi\|91209557\|ref\|YP_539543.1\| hypothetical protein UTI89_C0511 [Escherichia coli UTI89], gi\|91071131\|...	169.0	[0..1]	[159..1]
gi\|209910956, gi... - gi\|209917697\|ref\|YP_002291781.1\| hypothetical protein ECSE_0506 [Escherichia coli SE11], gi\|20991095... gi\|73854539, gi\|... - gi\|74311062\|ref\|YP_309481.1\| hypothetical protein SSON_0470 [Shigella sonnei Ss046], gi\|73854539\|gb\|... gi\|81239937, gi\|... - gi\|82775789\|ref\|YP_402136.1\| hypothetical protein SDY_0437 [Shigella dysenteriae Sd197], gi\|81239937... gi\|187427500, gi... - gi\|75177572\|ref\|ZP_00697653.1\| COG2606: Uncharacterized conserved protein [Shigella boydii BS512], g... gi\|81244386, gi\|... - gi\|82542975\|ref\|YP_406922.1\| hypothetical protein SBO_0383 [Shigella boydii Sb227], gi\|81244386\|gb\|A...	169.0	[0..1]	[159..1]
gi\|208815780, gi... - gi\|208815780\|ref\|ZP_03256959.1\| YbaK/EbsC protein [Escherichia coli O157:H7 str. EC4045], gi\|2087324... gi\|208728463, gi... - gi\|208808662\|ref\|ZP_03250999.1\| YbaK/EbsC protein [Escherichia coli O157:H7 str. EC4206], gi\|2087284... gi\|195936044 - gi\|195936044\|ref\|ZP_03081426.1\| hypothetical protein EscherichcoliO157_06191 [Escherichia coli O157:... gi\|168798047, gi... - gi\|189379247\|gb\|EDU97663.1\| YbaK/EbsC protein [Escherichia coli O157:H7 str. EC508], gi\|168798047\|re... gi\|217320468, gi... - gi\|217324247\|ref\|ZP_03440331.1\| YbaK/EbsC protein [Escherichia coli O157:H7 str. TW14588], gi\|217320... gi\|15829788, gi\|... - gi\|15829788\|ref\|NP_308561.1\| hypothetical protein ECs0534 [Escherichia coli O157:H7], gi\|13359991\|db... gi\|209160846, gi... - gi\|209399446\|ref\|YP_002269132.1\| YbaK/EbsC protein [Escherichia coli O157:H7 str. EC4115], gi\|209160... gi\|209778278, gi... - pir\|\|B85546 hypothetical protein ybaK [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|15829788, gi\|... - gi\|15829788\|ref\|NP_308561.1\| hypothetical protein ECs0534 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|208737135, gi... - gi\|208822942\|ref\|ZP_03263260.1\| YbaK/EbsC protein [Escherichia coli O157:H7 str. EC4042], gi\|2087371... gi\|189369048, gi... - gi\|189369048\|gb\|EDU87464.1\| YbaK/EbsC protein [Escherichia coli O157:H7 str. EC4501], gi\|168760362\|r... gi\|15800210, gi\|... - gi\|15800210\|ref\|NP_286222.1\| hypothetical protein Z0600 [Escherichia coli O157:H7 EDL933], gi\|125133... gi\|189357971, gi... - gi\|189357971\|gb\|EDU76390.1\| YbaK/EbsC protein [Escherichia coli O157:H7 str. EC4401], gi\|168754588\|r... gi\|188017730, gi... - gi\|188017730\|gb\|EDU55852.1\| YbaK/EbsC protein [Escherichia coli O157:H7 str. EC4113], gi\|168747841\|r... gi\|254791664, gi... - gi\|254791664\|ref\|YP_003076501.1\| bifunctional cys-tRNA Pro deacetylase/cys-tRNA Cys deacylase [Esche... gi\|168786335, gi... - gi\|189373496\|gb\|EDU91912.1\| YbaK/EbsC protein [Escherichia coli O157:H7 str. EC869], gi\|168786335\|re... gi\|168778977, gi... - gi\|189003013\|gb\|EDU71999.1\| YbaK/EbsC protein [Escherichia coli O157:H7 str. EC4076], gi\|168778977\|r... gi\|187769682, gi... - gi\|187769682\|gb\|EDU33526.1\| YbaK/EbsC protein [Escherichia coli O157:H7 str. EC4196], gi\|168774550\|r... gi\|189362478, gi... - gi\|189362478\|gb\|EDU80897.1\| YbaK/EbsC protein [Escherichia coli O157:H7 str. EC4486], gi\|168768438\|r...	167.0	[0..1]	[159..1]
gi\|145638952, gi... - gi\|145638952\|ref\|ZP_01794560.1\| tRNA pseudouridine synthase C [Haemophilus influenzae PittII], gi\|14... gi\|144978300, gi... - gi\|145629457\|ref\|ZP_01785255.1\| tRNA pseudouridine synthase C [Haemophilus influenzae 22.1-21], gi\|1... gi\|42631733 - gi\|42631733\|ref\|ZP_00157271.1\| COG2606: Uncharacterized conserved protein [Haemophilus influenzae R2...	167.0	[0..1]	[155..1]
gi\|145267857, gi... - gi\|145634991\|ref\|ZP_01790698.1\| tRNA pseudouridine synthase C [Haemophilus influenzae PittAA], gi\|14... Y1434_HAEIN, YBA... - Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase ybaK OS=Haemophilus influenzae GN=ybaK PE=1 SV=2, Uncharacteri... gi\|144986455, gi... - gi\|145632799\|ref\|ZP_01788532.1\| tRNA pseudouridine synthase C [Haemophilus influenzae 3655], gi\|1449... gi\|229844091, gi... - gi\|229844091\|ref\|ZP_04464232.1\| hypothetical protein CGSHi6P18H1_06626 [Haemophilus influenzae 6P18H... gi\|229846711, gi... - gi\|229846711\|ref\|ZP_04466818.1\| hypothetical protein CGSHi7P49H1_01768 [Haemophilus influenzae 7P49H... gi\|145641591, gi... - gi\|145641591\|ref\|ZP_01797168.1\| hypothetical protein CGSHiR3021_01532 [Haemophilus influenzae R3021]... gi\|148718176, gi... - gi\|148826934\|ref\|YP_001291687.1\| hypothetical protein CGSHiGG_01040 [Haemophilus influenzae PittGG],... gi\|148716134, gi... - gi\|148825974\|ref\|YP_001290727.1\| hypothetical protein CGSHiEE_04755 [Haemophilus influenzae PittEE],... gi\|145641591 - gi\|145641591\|ref\|ZP_01797168.1\| hypothetical protein CGSHiR3021_01532 [Haemophilus influenzae R3021] gi\|145636143, gi... - gi\|145636143\|ref\|ZP_01791813.1\| hypothetical protein CGSHiHH_09350 [Haemophilus influenzae PittHH], ... YBAK_HAEIN - Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 ... gi\|42629461 - gi\|42629461\|ref\|ZP_00155007.1\| COG2606: Uncharacterized conserved protein [Haemophilus influenzae R2... gi\|48866707, gi\|... - gi\|68250037\|ref\|YP_249149.1\| hypothetical protein NTHI1699 [Haemophilus influenzae 86-028NP], gi\|680...	167.0	[0..1]	[155..1]
gi\|1074777 - pir\|\|H64171 hypothetical protein HI1434 - Haemophilus influenzae (strain Rd KW20) gi\|1574272, gi\|1... - gi\|16273339\|ref\|NP_439583.1\| hypothetical protein HI1434 [Haemophilus influenzae Rd KW20], gi\|157427...	165.0	[0..1]	[155..1]
YBAK_SALTY - Uncharacterized protein ybaK OS=Salmonella typhimurium GN=ybaK PE=4 SV=1 YBAK_SALTY - Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase ybaK OS=Salmonella typhimurium GN=ybaK PE=3 SV=1 gi\|205324232, gi... - gi\|205324232\|gb\|EDZ12071.1\| YbaK/ebsC protein [Salmonella enterica subsp. enterica serovar Saintpaul... gi\|205330962, gi... - gi\|205330962\|gb\|EDZ17726.1\| YbaK/ebsC protein [Salmonella enterica subsp. enterica serovar 4,[5],12:... gi\|168231489, gi... - gi\|205334163\|gb\|EDZ20927.1\| YbaK/ebsC protein [Salmonella enterica subsp. enterica serovar Kentucky ... gi\|168239012, gi... - gi\|197288220\|gb\|EDY27605.1\| YbaK/ebsC protein [Salmonella enterica subsp. enterica serovar Schwarzen... gi\|161615302, gi... - gi\|161615302\|ref\|YP_001589267.1\| hypothetical protein SPAB_03072 [Salmonella enterica subsp. enteric... YBAK_SALTY - Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 7... gi\|238911375 - gi\|238911375\|ref\|ZP_04655212.1\| hypothetical protein SentesTe_09585 [Salmonella enterica subsp. ente... lcl\|NC_016856.1_... - [gene=ybaK] [protein=hypothetical protein] [protein_id=YP_005236196.1] [location=complement(556097..... gi\|207855974, gi... - gi\|207855974\|ref\|YP_002242625.1\| hypothetical protein SEN0476 [Salmonella enterica subsp. enterica s... gi\|224466860, gi... - gi\|224582333\|ref\|YP_002636131.1\| hypothetical protein SPC_0510 [Salmonella enterica subsp. enterica ... gi\|197262688, gi... - gi\|197262688\|ref\|ZP_03162762.1\| YbaK/ebsC protein [Salmonella enterica subsp. enterica serovar Saint... gi\|198243479, gi... - gi\|198243479\|ref\|YP_002214451.1\| YbaK/ebsC protein [Salmonella enterica subsp. enterica serovar Dubl... gi\|200390201, gi... - gi\|200390201\|ref\|ZP_03216812.1\| YbaK/ebsC protein [Salmonella enterica subsp. enterica serovar Virch... gi\|205351802, gi... - gi\|205351802\|ref\|YP_002225603.1\| hypothetical protein SG0506 [Salmonella enterica subsp. enterica se... gi\|194449139, gi... - gi\|194449139\|ref\|YP_002044528.1\| hypothetical protein SeHA_C0602 [Salmonella enterica subsp. enteric... gi\|194470376, gi... - gi\|194470376\|ref\|ZP_03076360.1\| YbaK/ebsC protein [Salmonella enterica subsp. enterica serovar Kentu... gi\|194735308, gi... - gi\|194735308\|ref\|YP_002113527.1\| YbaK/ebsC protein [Salmonella enterica subsp. enterica serovar Schw... gi\|197211151, gi... - gi\|197247448\|ref\|YP_002145479.1\| YbaK/ebsC protein [Salmonella enterica subsp. enterica serovar Agon... gi\|168240328, gi... - gi\|205339712\|gb\|EDZ26476.1\| YbaK/ebsC protein [Salmonella enterica subsp. enterica serovar Heidelber... gi\|195632001, gi... - gi\|195632001\|gb\|EDX50521.1\| YbaK/ebsC protein [Salmonella enterica subsp. enterica serovar Newport s... gi\|62126740, gi\|... - gi\|62179107\|ref\|YP_215524.1\| hypothetical protein SC0537 [Salmonella enterica subsp. enterica serova... gi\|168818884, gi... - gi\|205344139\|gb\|EDZ30903.1\| YbaK/ebsC protein [Salmonella enterica subsp. enterica serovar Weltevred... gi\|194403381, gi... - gi\|194444718\|ref\|YP_002039740.1\| YbaK/ebsC protein [Salmonella enterica subsp. enterica serovar Newp...	164.0	[0..1]	[159..1]
gi\|238788069, gi... - gi\|77974250\|ref\|ZP_00829791.1\| COG2606: Uncharacterized conserved protein [Yersinia frederiksenii AT...	164.0	[0..1]	[159..1]
gi\|238785365, gi... - gi\|77958369\|ref\|ZP_00822403.1\| COG2606: Uncharacterized conserved protein [Yersinia bercovieri ATCC ...	164.0	[0..1]	[159..1]

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Predicted Domain #1

Region A:
Residues: [1-159]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPAVKLLEK NKISFQIHTY EHDPAETNFG DEVVKKLGLN PDQVYKTLLV AVNGDMKHLA  60
   61 VAVTPVAGQL DLKKVAKALG AKKVEMADPM VAQRSTGYLV GGISPLGQKK RLPTIIDAPA 120
  121 QEFATIYVSG GKRGLDIELA AGDLAKILDA KFADIARRD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.522879
Match:	2dxaA
Description:	No description for 2dxaA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits