YRC Public Data Repository - Protein Structure Prediction

Protein:	YBAJ_ECOLI
Organism:	Escherichia coli
Length:	124 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YBAJ_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|83570210 - gi\|83570210\|ref\|ZP_00921656.1\| hypothetical protein Sdys1_01001495 [Shigella dysenteriae 1012]	244.0	[0..1]	[124..1]
gi\|24111844, gi\|... - gi\|24111844\|ref\|NP_706354.1\| hypothetical protein SF0406 [Shigella flexneri 2a str. 301], gi\|2405063... gi\|30061961, gi\|... - gi\|30061961\|ref\|NP_836132.1\| hypothetical protein S0413 [Shigella flexneri 2a str. 2457T], gi\|300402... gi\|110614036, gi... - gi\|110804488\|ref\|YP_688008.1\| hypothetical protein SFV_0434 [Shigella flexneri 5 str. 8401], gi\|1106...	242.0	[0..1]	[124..1]
gi\|81244365, gi\|... - gi\|82542954\|ref\|YP_406901.1\| hypothetical protein SBO_0361 [Shigella boydii Sb227], gi\|81244365\|gb\|A...	241.0	[0..1]	[124..1]
gi\|62126719, gi\|... - gi\|62179086\|ref\|YP_215503.1\| hypothetical protein SC0516 [Salmonella enterica subsp. enterica serova... gi\|56128628, gi\|... - gi\|56414371\|ref\|YP_151446.1\| hypothetical protein SPA2248 [Salmonella enterica subsp. enterica serov... gi\|194451112, gi... - gi\|194451112\|ref\|YP_002044508.1\| hypothetical protein SeHA_C0577 [Salmonella enterica subsp. enteric... gi\|194457807, gi... - gi\|194471443\|ref\|ZP_03077427.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|194736974, gi... - gi\|194736974\|ref\|YP_002113505.1\| hypothetical protein SeSA_A0534 [Salmonella enterica subsp. enteric... gi\|197248986, gi... - gi\|197248986\|ref\|YP_002145455.1\| hypothetical protein SeAg_B0515 [Salmonella enterica subsp. enteric... gi\|205349995, gi... - gi\|205349995\|gb\|EDZ36626.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|168465569, gi... - gi\|195631580\|gb\|EDX50100.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|168818911, gi... - gi\|205344056\|gb\|EDZ30820.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|194402528, gi... - gi\|194443865\|ref\|YP_002039717.1\| hypothetical protein SNSL254_A0524 [Salmonella enterica subsp. ente... gi\|29138406, gi\|... - gi\|29142774\|ref\|NP_806116.1\| hypothetical protein t2386 [Salmonella enterica subsp. enterica serovar... gi\|205330950, gi... - gi\|205330950\|gb\|EDZ17714.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|16759454 - gi\|16759454\|ref\|NP_455071.1\| hypothetical protein STY0517 [Salmonella enterica subsp. enterica serov... gi\|168231463, gi... - gi\|205334063\|gb\|EDZ20827.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|16501746, gi\|... - gi\|25340081\|pir\|\|AE0561 conserved hypothetical protein STY0517 [imported] - Salmonella enterica subs... gi\|168237589, gi... - gi\|197289461\|gb\|EDY28824.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|16763854, gi\|... - gi\|16763854\|ref\|NP_459469.1\| hypothetical protein STM0474 [Salmonella typhimurium LT2], gi\|16418981\|... gi\|168240304, gi... - gi\|205339948\|gb\|EDZ26712.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|205323412, gi... - gi\|205323412\|gb\|EDZ11251.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|213650347 - gi\|213650347\|ref\|ZP_03380400.1\| hypothetical protein SentesTy_25735 [Salmonella enterica subsp. ente... gi\|213855676 - gi\|213855676\|ref\|ZP_03383916.1\| hypothetical protein SentesT_17203 [Salmonella enterica subsp. enter... gi\|224466838, gi... - gi\|224582311\|ref\|YP_002636109.1\| hypothetical protein SPC_0488 [Salmonella enterica subsp. enterica ... gi\|213418115 - gi\|213418115\|ref\|ZP_03351183.1\| hypothetical protein Salmonentericaenterica_09463 [Salmonella enteri... gi\|213427135 - gi\|213427135\|ref\|ZP_03359885.1\| hypothetical protein SentesTyphi_16880 [Salmonella enterica subsp. e... gi\|213579730 - gi\|213579730\|ref\|ZP_03361556.1\| hypothetical protein SentesTyph_00395 [Salmonella enterica subsp. en... gi\|213612547 - gi\|213612547\|ref\|ZP_03370373.1\| hypothetical protein SentesTyp_08607 [Salmonella enterica subsp. ent... lcl\|NC_016856.1_... - [gene=ybaJ] [protein=hypothetical protein] [protein_id=YP_005236171.1] [location=complement(529071..... gi\|204930465, gi... - gi\|204930465\|ref\|ZP_03221395.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|205271563, gi... - gi\|205351782\|ref\|YP_002225583.1\| hypothetical protein SG0484 [Salmonella enterica subsp. enterica se... gi\|206707756, gi... - gi\|207855953\|ref\|YP_002242604.1\| hypothetical protein SEN0455 [Salmonella enterica subsp. enterica s... gi\|213162900 - gi\|213162900\|ref\|ZP_03348610.1\| hypothetical protein Salmoneentericaenterica_23906 [Salmonella enter... gi\|197263742, gi... - gi\|197263742\|ref\|ZP_03163816.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|197094768, gi... - gi\|197363291\|ref\|YP_002142928.1\| hypothetical protein SSPA2091 [Salmonella enterica subsp. enterica ... gi\|198242885, gi... - gi\|198242885\|ref\|YP_002214427.1\| hypothetical protein SeD_A0518 [Salmonella enterica subsp. enterica... gi\|199603408, gi... - gi\|200390963\|ref\|ZP_03217574.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... gi\|238911396 - gi\|238911396\|ref\|ZP_04655233.1\| hypothetical protein SentesTe_09690 [Salmonella enterica subsp. ente...	237.0	[0..1]	[124..1]
gi\|227113485 - gi\|227113485\|ref\|ZP_03827141.1\| hypothetical protein PcarbP_11002 [Pectobacterium carotovorum subsp.... gi\|49610631, gi\|... - gi\|50120105\|ref\|YP_049272.1\| hypothetical protein ECA1166 [Pectobacterium atrosepticum SCRI1043], gi...	232.0	[0..1]	[120..1]
gi\|77957218, gi\|... - gi\|77957218\|ref\|ZP_00821279.1\| hypothetical protein YberA_01002539 [Yersinia bercovieri ATCC 43970],...	228.0	[0..1]	[118..1]
gi\|77974282 - gi\|77974282\|ref\|ZP_00829823.1\| hypothetical protein YfreA_01001862 [Yersinia frederiksenii ATCC 3364... gi\|238696945, gi... - gi\|238764838\|ref\|ZP_04625779.1\| hypothetical protein ykris0001_31120 [Yersinia kristensenii ATCC 336...	228.0	[0..1]	[118..1]
gi\|238791453, gi... - gi\|77979372\|ref\|ZP_00834791.1\| hypothetical protein YintA_01000856 [Yersinia intermedia ATCC 29909],...	227.0	[0..1]	[118..1]
gi\|37222596 - gi\|37222596\|gb\|AAQ90016.1\| YmoB [Yersinia enterocolitica] gi\|123443322, gi... - gi\|123443322\|ref\|YP_001007296.1\| hypothetical protein YE3114 [Yersinia enterocolitica subsp. enteroc...	227.0	[0..1]	[118..1]
gi\|77962341, gi\|... - gi\|77962341\|ref\|ZP_00826162.1\| hypothetical protein YmolA_01001370 [Yersinia mollaretii ATCC 43969],...	226.0	[0..1]	[118..1]

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Predicted Domain #1

Region A:
Residues: [1-124]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDEYSPKRHD IAQLKFLCET LYHDCLANLE ESNHGWVNDP TSAINLQLNE LIEHIATFAL  60
   61 NYKIKYNEDN KLIEQIDEYL DDTFMLFSSY GINMQDLQKW RKSGNRLFRC FVNATKENPA 120
  121 SLSC

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.772	a.77.1	DEATH domain
View	Download	0.602	a.19.1	Fertilization protein
View	Download	0.602	a.24.26	Description not found.
View	Download	0.598	a.19.1	Fertilization protein
View	Download	0.558	a.36.1	Signal peptide-binding domain
View	Download	0.542	a.45.1	Glutathione S-transferase (GST), C-terminal domain
View	Download	0.538	a.45.1	Glutathione S-transferase (GST), C-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits