YRC Public Data Repository - Protein Structure Prediction

Protein:	YBAD_ECOLI, NRDR...
Organism:	Escherichia coli
Length:	149 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YBAD_ECOLI, NRDR....

Description	E-value	Query Range	Subject Range
gi\|15642270, gi\|... - gi\|9656834\|gb\|AAF95416.1\| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor str. N169... gi\|229355160, gi... - gi\|229507655\|ref\|ZP_04397160.1\| ribonucleotide reductase transcriptional regulator NrdR [Vibrio chol... gi\|229512150, gi... - gi\|229512150\|ref\|ZP_04401629.1\| ribonucleotide reductase transcriptional regulator NrdR [Vibrio chol... gi\|227010284, gi... - gi\|227082396\|ref\|YP_002810947.1\| Transcriptional repressor nrdR [Vibrio cholerae M66-2], gi\|22701028... gi\|229522217, gi... - gi\|229522217\|ref\|ZP_04411634.1\| ribonucleotide reductase transcriptional regulator NrdR [Vibrio chol... gi\|229337855, gi... - gi\|229524274\|ref\|ZP_04413679.1\| ribonucleotide reductase transcriptional regulator NrdR [Vibrio chol... gi\|229349094, gi... - gi\|229513913\|ref\|ZP_04403375.1\| ribonucleotide reductase transcriptional regulator NrdR [Vibrio chol... gi\|229519285, gi... - gi\|229519285\|ref\|ZP_04408728.1\| ribonucleotide reductase transcriptional regulator NrdR [Vibrio chol... gi\|11279353 - gi\|11279353\|pir\|\|G82098 conserved hypothetical protein VC2272 [imported] - Vibrio cholerae (strain N... gi\|229528727, gi... - gi\|229528727\|ref\|ZP_04418117.1\| ribonucleotide reductase transcriptional regulator NrdR [Vibrio chol... gi\|229369814, gi... - gi\|229607159\|ref\|YP_002877807.1\| ribonucleotide reductase transcriptional regulator NrdR [Vibrio cho...	211.0	[0..1]	[149..8]
gi\|37197786, gi\|... - gi\|37679044\|ref\|NP_933653.1\| hypothetical protein VV0860 [Vibrio vulnificus YJ016], gi\|37197786\|dbj\|...	208.0	[0..1]	[149..13]
NRDR_VIBTL - Transcriptional repressor NrdR OS=Vibrio tasmaniensis (strain LGP32) GN=nrdR PE=3 SV=1 gi\|84375023, gi\|... - gi\|84394364\|ref\|ZP_00993085.1\| hypothetical protein V12B01_22231 [Vibrio splendidus 12B01], gi\|84375... gi\|86147438, gi\|... - gi\|86147438\|ref\|ZP_01065750.1\| hypothetical protein MED222_21329 [Vibrio sp. MED222], gi\|85834731\|gb...	207.0	[0..1]	[149..1]
gi\|26522769 - gi\|26522769\|dbj\|BAC44856.1\| RibX [Vibrio fischeri] NRDR_VIBFM - Transcriptional repressor NrdR OS=Vibrio fischeri (strain MJ11) GN=nrdR PE=3 SV=1 NRDR_VIBF1 - Transcriptional repressor NrdR OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=nrdR PE=3 SV=1	207.0	[0..1]	[147..1]
gi\|153803001, gi... - gi\|153803001\|ref\|ZP_01957587.1\| transcriptional regulator, NrdR family [Vibrio cholerae MZO-3], gi\|1... gi\|126519215, gi... - gi\|153823254\|ref\|ZP_01975921.1\| transcriptional regulator, NrdR family [Vibrio cholerae B33], gi\|126... gi\|254286057, gi... - gi\|254286057\|ref\|ZP_04961018.1\| transcriptional regulator, NrdR family [Vibrio cholerae AM-19226], g... gi\|153828179, gi... - gi\|153828179\|ref\|ZP_01980846.1\| transcriptional regulator, NrdR family [Vibrio cholerae 623-39], gi\|... gi\|75822461, gi\|... - gi\|75822461\|ref\|ZP_00752082.1\| COG1327: Predicted transcriptional regulator, consists of a Zn-ribbon... gi\|116219414, gi... - gi\|75818770\|ref\|ZP_00748895.1\| COG1327: Predicted transcriptional regulator, consists of a Zn-ribbon... gi\|75814848, gi\|... - gi\|75814848\|ref\|ZP_00745393.1\| COG1327: Predicted transcriptional regulator, consists of a Zn-ribbon... NRDR_VIBCH, Y227... - (Q9KPU0) Hypothetical UPF0168 protein VC2272, (Q9KPU0) UPF0168 protein VC2272, Transcriptional repre... gi\|75828873, gi\|... - gi\|75828873\|ref\|ZP_00758205.1\| COG1327: Predicted transcriptional regulator, consists of a Zn-ribbon... NRDR_VIBC3 - Transcriptional repressor NrdR OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 3... NRDR_VIBCH - Transcriptional repressor NrdR OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N169... gi\|121549633, gi... - gi\|121586221\|ref\|ZP_01676012.1\| transcriptional regulator, NrdR family [Vibrio cholerae 2740-80], gi... gi\|153216175, gi... - gi\|153216175\|ref\|ZP_01950314.1\| transcriptional regulator, NrdR family [Vibrio cholerae 1587], gi\|12... gi\|124119717, gi... - gi\|153221370\|ref\|ZP_01952348.1\| transcriptional regulator, NrdR family [Vibrio cholerae MAK 757], gi...	206.0	[0..1]	[149..1]
Y678_VIBPA, NRDR... - (Q87RU8) UPF0168 protein VP0678, Transcriptional repressor NrdR OS=Vibrio parahaemolyticus GN=nrdR P... NRDR_VIBPA - Transcriptional repressor NrdR OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=nr...	206.0	[0..1]	[149..1]
gi\|91190013, gi\|... - gi\|91225070\|ref\|ZP_01260292.1\| hypothetical protein V12G01_12620 [Vibrio alginolyticus 12G01], gi\|91...	205.0	[0..1]	[149..1]
NRDR_ALKOO - Transcriptional repressor NrdR OS=Alkaliphilus oremlandii (strain OhILAs) GN=nrdR PE=3 SV=1	205.0	[0..1]	[148..1]
gi\|78362274, gi\|... - gi\|78365738\|ref\|ZP_00836023.1\| Protein of unknown function DUF193 [Shewanella sp. PV-4], gi\|78362274...	205.0	[0..1]	[149..33]
NRDR_CLOTH - Transcriptional repressor NrdR OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 1034...	204.0	[0..1]	[149..1]

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Predicted Domain #1

Region A:
Residues: [1-149]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHCPFCFAVD TKVIDSRLVG EGSSVRRRRQ CLVCNERFTT FEVAELVMPR VVKSNDVREP  60
   61 FNEEKLRSGM LRALEKRPVS SDDVEMAINH IKSQLRATGE REVPSKMIGN LVMEQLKKLD 120
  121 KVAYIRFASV YRSFEDIKEF GEEIARLED

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	5.0
Match:	1rlrA
Description:	STRUCTURE OF RIBONUCLEOTIDE REDUCTASE PROTEIN R1
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits