YRC Public Data Repository - Protein Structure Prediction

Protein:	YAJC_ECOLI
Organism:	Escherichia coli
Length:	110 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YAJC_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|59480676, gi\|... - gi\|59712575\|ref\|YP_205351.1\| preprotein translocase subunit YajC [Vibrio fischeri ES114], gi\|5948067...	143.0	[0..1]	[110..1]
gi\|26106810, gi\|... - gi\|26246412\|ref\|NP_752451.1\| preprotein translocase subunit YajC [Escherichia coli CFT073], gi\|26106... gi\|237707599, gi... - gi\|237707599\|ref\|ZP_04538080.1\| preprotein translocase subunit YajC [Escherichia sp. 3_2_53FAA], gi\|... gi\|91209475, gi\|... - gi\|91209475\|ref\|YP_539461.1\| hypothetical protein YajC [Escherichia coli UTI89], gi\|91071049\|gb\|ABE0...	142.0	[0..1]	[110..11]
gi\|42932 - gi\|42932\|emb\|CAA39633.1\| unnamed protein product [Escherichia coli]	142.0	[0..1]	[110..1]
gi\|89072681, gi\|... - gi\|89072681\|ref\|ZP_01159246.1\| preprotein translocase subunit YajC [Photobacterium sp. SKA34], gi\|89...	142.0	[0..1]	[110..1]
gi\|90579385, gi\|... - gi\|90579385\|ref\|ZP_01235195.1\| preprotein translocase subunit YajC [Vibrio angustum S14], gi\|9044021...	141.0	[0..1]	[110..1]
gi\|89094743, gi\|... - gi\|89094743\|ref\|ZP_01167678.1\| preprotein translocase, YajC subunit [Oceanospirillum sp. MED92], gi\|...	141.0	[0..1]	[110..1]
gi\|197363360, gi... - gi\|197363360\|ref\|YP_002142997.1\| preprotein translocase subunit YajC [Salmonella enterica subsp. ent... gi\|56414439, gi\|... - gi\|56414439\|ref\|YP_151514.1\| preprotein translocase subunit YajC [Salmonella enterica subsp. enteric...	140.0	[0..1]	[110..1]
gi\|187733401, gi... - gi\|75176880\|ref\|ZP_00696996.1\| COG1862: Preprotein translocase subunit YajC [Shigella boydii BS512],...	140.0	[0..1]	[110..1]
gi\|90324329, gi\|... - gi\|90414613\|ref\|ZP_01222586.1\| preprotein translocase subunit YajC [Photobacterium profundum 3TCK], ...	140.0	[0..1]	[110..1]
gi\|168240226, gi... - gi\|205340318\|gb\|EDZ27082.1\| preprotein translocase, YajC subunit [Salmonella enterica subsp. enteric... gi\|168237518, gi... - gi\|197289571\|gb\|EDY28934.1\| preprotein translocase, YajC subunit [Salmonella enterica subsp. enteric... gi\|168465493, gi... - gi\|195631951\|gb\|EDX50471.1\| preprotein translocase, YajC subunit [Salmonella enterica subsp. enteric... gi\|205349957, gi... - gi\|205349957\|gb\|EDZ36588.1\| preprotein translocase, YajC subunit [Salmonella enterica subsp. enteric... gi\|167551786, gi... - gi\|205323438\|gb\|EDZ11277.1\| preprotein translocase, YajC subunit [Salmonella enterica subsp. enteric... gi\|161615409, gi... - gi\|161615409\|ref\|YP_001589374.1\| preprotein translocase subunit YajC [Salmonella enterica subsp. ent... gi\|205333454, gi... - gi\|205333454\|gb\|EDZ20218.1\| preprotein translocase, YajC subunit [Salmonella enterica subsp. enteric... gi\|167992253, gi... - gi\|205329561\|gb\|EDZ16325.1\| preprotein translocase, YajC subunit [Salmonella enterica subsp. enteric... lcl\|NC_016856.1_... - [gene=yajC] [protein=preprotein translocase subunit YajC] [protein_id=YP_005236097.1] [location=4626... gi\|213420364 - gi\|213420364\|ref\|ZP_03353430.1\| preprotein translocase subunit YajC [Salmonella enterica subsp. ente... gi\|213163214 - gi\|213163214\|ref\|ZP_03348924.1\| preprotein translocase subunit YajC [Salmonella enterica subsp. ente... gi\|213609613 - gi\|213609613\|ref\|ZP_03369439.1\| preprotein translocase subunit YajC [Salmonella enterica subsp. ente... gi\|213427840 - gi\|213427840\|ref\|ZP_03360590.1\| preprotein translocase subunit YajC [Salmonella enterica subsp. ente... gi\|204927403, gi... - gi\|204927403\|ref\|ZP_03218605.1\| preprotein translocase, YajC subunit [Salmonella enterica subsp. ent... gi\|199601812, gi... - gi\|200389367\|ref\|ZP_03215978.1\| preprotein translocase, YajC subunit [Salmonella enterica subsp. ent... gi\|207855888, gi... - gi\|207855888\|ref\|YP_002242539.1\| preprotein translocase subunit YajC [Salmonella enterica subsp. ent... gi\|205351718, gi... - gi\|205351718\|ref\|YP_002225519.1\| preprotein translocase subunit YajC [Salmonella enterica subsp. ent... gi\|197251743, gi... - gi\|197251743\|ref\|YP_002145389.1\| preprotein translocase, YajC subunit [Salmonella enterica subsp. en... gi\|194736494, gi... - gi\|194736494\|ref\|YP_002113439.1\| preprotein translocase, YajC subunit [Salmonella enterica subsp. en... gi\|198244388, gi... - gi\|198244388\|ref\|YP_002214360.1\| preprotein translocase, YajC subunit [Salmonella enterica subsp. en... gi\|197263191, gi... - gi\|197263191\|ref\|ZP_03163265.1\| preprotein translocase, YajC subunit [Salmonella enterica subsp. ent... gi\|194403529, gi... - gi\|194444866\|ref\|YP_002039648.1\| preprotein translocase, YajC subunit [Salmonella enterica subsp. en... gi\|168818986, gi... - gi\|205344154\|gb\|EDZ30918.1\| preprotein translocase, YajC subunit [Salmonella enterica subsp. enteric... gi\|194456702, gi... - gi\|194470338\|ref\|ZP_03076322.1\| preprotein translocase, YajC subunit [Salmonella enterica subsp. ent... gi\|194448478, gi... - gi\|194448478\|ref\|YP_002044440.1\| preprotein translocase subunit YajC [Salmonella enterica subsp. ent... gi\|16759384 - gi\|16759384\|ref\|NP_455001.1\| preprotein translocase subunit YajC [Salmonella enterica subsp. enteric... gi\|16418910, gi\|... - gi\|16763786\|ref\|NP_459401.1\| preprotein translocase subunit YajC [Salmonella typhimurium LT2], gi\|16... gi\|29138477, gi\|... - gi\|29142845\|ref\|NP_806187.1\| preprotein translocase subunit YajC [Salmonella enterica subsp. enteric... gi\|62126651, gi\|... - gi\|62179018\|ref\|YP_215435.1\| preprotein translocase subunit YajC [Salmonella enterica subsp. enteric... gi\|214000363 - gi\|214000363\|ref\|ZP_03411098.1\| preprotein translocase subunit YajC [Salmonella enterica subsp. ente... gi\|213650159 - gi\|213650159\|ref\|ZP_03380212.1\| preprotein translocase subunit YajC [Salmonella enterica subsp. ente... gi\|224466770, gi... - gi\|224582243\|ref\|YP_002636041.1\| preprotein translocase subunit YajC [Salmonella enterica subsp. ent... gi\|16501675, gi\|... - gi\|25302585\|pir\|\|AF0552 probable membrane protein STY0444 [imported] - Salmonella enterica subsp. en...	140.0	[0..1]	[110..1]

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Predicted Domain #1

Region A:
Residues: [1-110]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFFISDAVA ATGAPAQGSP MSLILMLVVF GLIFYFMILR PQQKRTKEHK KLMDSIAKGD  60
   61 EVLTNGGLVG RVTKVAENGY IAIALNDTTE VVIKRDFVAA VLPKGTMKAL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	47.309804
Match:	PF02699.6
Description:	No description for PF02699.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits