YRC Public Data Repository - Protein Structure Prediction

Protein:	YAIP_ECOLI
Organism:	Escherichia coli
Length:	398 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YAIP_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|52142108, gi\|... - gi\|52142108\|ref\|YP_084722.1\| group-specific protein [Bacillus cereus E33L], gi\|51975577\|gb\|AAU17127....	235.0	[0..5]	[378..730]
gi\|49478225, gi\|... - gi\|49478225\|ref\|YP_037525.1\| glycosyl transferase and polysaccharide deacetylase fusion [Bacillus th...	235.0	[0..5]	[378..726]
gi\|47558704, gi\|... - gi\|47564552\|ref\|ZP_00235597.1\| putative bi-functional transferase/deacetylase [Bacillus cereus G9241...	233.0	[0..5]	[378..726]
gi\|29831372, gi\|... - gi\|29831372\|ref\|NP_826006.1\| polysaccharide deacetylase/glycosyl transferase [Streptomyces avermitil...	233.0	[0..1]	[379..403]
gi\|254738471 - gi\|254738471\|ref\|ZP_05196174.1\| polysaccharide deacetylase/glycosyl transferase, group 2 family prot... gi\|254723400 - gi\|254723400\|ref\|ZP_05185188.1\| polysaccharide deacetylase/glycosyl transferase, group 2 family prot... gi\|227005981, gi... - gi\|227813742\|ref\|YP_002813751.1\| polysaccharide deacetylase/glycosyl transferase, group 2 family pro... gi\|254761300 - gi\|254761300\|ref\|ZP_05213324.1\| polysaccharide deacetylase/glycosyl transferase, group 2 family prot... gi\|254752787 - gi\|254752787\|ref\|ZP_05204823.1\| polysaccharide deacetylase/glycosyl transferase, group 2 family prot... gi\|254742364 - gi\|254742364\|ref\|ZP_05200049.1\| polysaccharide deacetylase/glycosyl transferase, group 2 family prot... gi\|47528767, gi\|... - gi\|47528767\|ref\|YP_020116.1\| glycosyl transferase, group 2 family protein/polysaccharide deacetylase... gi\|30263384, gi\|... - gi\|30263384\|ref\|NP_845761.1\| glycosyl transferase, group 2 family protein/polysaccharide deacetylase... gi\|49180160, gi\|... - gi\|49186233\|ref\|YP_029485.1\| glycosyl transferase, group 2 family protein/polysaccharide deacetylase...	230.0	[0..5]	[378..538]
gi\|65320716, gi\|... - gi\|65320716\|ref\|ZP_00393675.1\| COG1215: Glycosyltransferases, probably involved in cell wall biogene...	228.0	[0..5]	[378..538]
gi\|75761290, gi\|... - gi\|75761290\|ref\|ZP_00741270.1\| Polysaccharide deacetylase / Glycosyltransferase [Bacillus thuringie...	227.0	[0..5]	[378..564]
gi\|110640629, gi... - gi\|110640629\|ref\|YP_668357.1\| putative glycosyl transferase [Escherichia coli 536], gi\|110342221\|gb\|...	225.0	[0..3]	[398..3]
gi\|218425794, gi... - gi\|218688230\|ref\|YP_002396442.1\| putative membrane-associated glycosyltransferase [Escherichia coli ... gi\|26106762, gi\|... - gi\|26246364\|ref\|NP_752403.1\| hypothetical protein c0469 [Escherichia coli CFT073], gi\|26106762\|gb\|AA...	223.0	[0..3]	[398..3]

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Predicted Domain #1

Region A:
Residues: [1-288]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTWIFICMS IAMLLWFLST LRRKPSQKKG CIDAIIPAYN EGPCLAQSLD NLLRNPYFCR  60
   61 VICVNDGSTD NTEAVMAEVK RKWGDRFVAV TQKNTGKGGA LMNGLNYATC DQVFLSDADT 120
  121 YVPPDQDGMG YMLAEIERGA DAVGGIPSTA LKGAGLLPHI RATVKLPMIV MKRTLQQLLG 180
  181 GAPFIISGAC GMFRTDVLRK FGFSDRTKVE DLDLTWTLVA NGYRIRQANR CIVYPQECNS 240
  241 PREEWRRWRR WIVGYAVCMR LHKRLLFSRF GIFSIFPMLL VVLYGVGI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.522879
Match:	2d7iA
Description:	No description for 2d7iA was found.

Predicted Domain #2

Region A:
Residues: [289-398]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YLTTWFNEFI TTGPHGVVLA MFPLIWVGVV CVIGAFSAWF HRCWLLVPLA PLSVVYVLLA  60
   61 YAIWIIYGLI AFFTGREPQR DKPTRYSALV EASTAYSQPS VTGTEKLSEA

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.996
Match:	2j0qI
Description:	No description for 2j0qI was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits