YRC Public Data Repository - Protein Structure Prediction

Protein:	YAIE_ECOLI
Organism:	Escherichia coli
Length:	94 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YAIE_ECOLI.

Description	E-value	Query Range	Subject Range
Y5077_BURVG - UPF0345 protein Bcep1808_5077 OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=Bcep1808_5077...	163.0	[0..3]	[94..15]
gi\|84359704, gi\|... - gi\|84359704\|ref\|ZP_00984436.1\| COG3123: Uncharacterized protein conserved in bacteria [Burkholderia ...	163.0	[0..3]	[94..15]
gi\|113527792, gi... - gi\|113869016\|ref\|YP_727505.1\| hypothetical protein H16_A3062 [Ralstonia eutropha H16], gi\|113527792\|...	161.0	[0..3]	[93..28]
Y1338_PELCD - UPF0345 protein Pcar_1338 OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=Pcar_1338 PE=3 ...	161.0	[0..3]	[94..12]
gi\|84693202, gi\|... - gi\|84715378\|ref\|ZP_01022479.1\| similar to Uncharacterized protein conserved in bacteria [Polaromonas...	161.0	[0..3]	[93..71]
Y2901_CUPMC - UPF0345 protein Rmet_2901 OS=Cupriavidus metallidurans (strain ATCC 43123 / DSM 2839 / NBRC 102507 /...	160.0	[0..3]	[93..12]
Y1300_BURS3 - UPF0345 protein Bcep18194_B1300 OS=Burkholderia sp. (strain 383) GN=Bcep18194_B1300 PE=3 SV=1 Y5176_BURCJ - UPF0345 protein BceJ2315_51760 OS=Burkholderia cenocepacia (strain ATCC BAA-245 / DSM 16553 / LMG 16... gi\|84354722, gi\|... - gi\|84354722\|ref\|ZP_00979624.1\| COG3123: Uncharacterized protein conserved in bacteria [Burkholderia ... Y3823_BURCA - UPF0345 protein Bcen_3823 OS=Burkholderia cenocepacia (strain AU 1054) GN=Bcen_3823 PE=3 SV=1 Y4545_BURCH - UPF0345 protein Bcen2424_4545 OS=Burkholderia cenocepacia (strain HI2424) GN=Bcen2424_4545 PE=3 SV=1 gi\|171092102, gi... - gi\|171322566\|ref\|ZP_02911350.1\| protein of unknown function DUF1255 [Burkholderia ambifaria MEX-5], ... Y1300_BURL3 - UPF0345 protein Bcep18194_B1300 OS=Burkholderia lata (strain ATCC 17760 / LMG 22485 / NCIMB 9086 / R... Y5759_BURCC - UPF0345 protein Bcenmc03_5759 OS=Burkholderia cenocepacia (strain MC0-3) GN=Bcenmc03_5759 PE=3 SV=1	160.0	[0..3]	[94..15]
Y4201_PSEF5 - UPF0345 protein PFL_4201 OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=PFL_4201 PE=3 SV...	160.0	[0..1]	[93..1]
gi\|83748944, gi\|... - gi\|83748944\|ref\|ZP_00945953.1\| Hypothetical cytosolic protein [Ralstonia solanacearum UW551], gi\|837... gi\|207744171, gi... - gi\|207744171\|ref\|YP_002260563.1\| hypothetical protein RSIPO_02356 [Ralstonia solanacearum IPO1609], ...	160.0	[0..3]	[93..14]
Y9292_BURXL - UPF0345 protein Bxeno_C1292 OS=Burkholderia xenovorans (strain LB400) GN=Bxeno_C1292 PE=3 SV=1	160.0	[0..3]	[94..15]

Back

Predicted Domain #1

Region A:
Residues: [1-94]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQSNEYFSG KVKSIGFSSS STGRASVGVM VEGEYTFSTA EPEEMTVISG ALNVLLPDAT  60
   61 DWQVYEAGSV FNVPGHSEFH LQVAEPTSYL CRYL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.0
Match:	2oyzA
Description:	No description for 2oyzA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits