YRC Public Data Repository - Protein Structure Prediction

Protein:	YAHA_ECOLI
Organism:	Escherichia coli
Length:	362 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YAHA_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|89519310 - gi\|89519310\|gb\|ABD75787.1\| sensory box/GGDEF family protein [uncultured bacterium]	419.0	[0..1]	[361..526]
gi\|88947158, gi\|... - gi\|88947158\|ref\|ZP_01150169.1\| PAS:GGDEF [Desulfotomaculum reducens MI-1], gi\|88923371\|gb\|EAR42405.1...	416.0	[0..1]	[359..594]
gi\|48859207, gi\|... - gi\|67875521\|ref\|ZP_00504817.1\| PAS:GGDEF [Clostridium thermocellum ATCC 27405], gi\|67850552\|gb\|EAM46...	407.0	[0..1]	[357..504]
gi\|27355863, gi\|... - gi\|27382691\|ref\|NP_774220.1\| hypothetical protein bll7580 [Bradyrhizobium japonicum USDA 110], gi\|27...	399.0	[0..1]	[357..1014]
gi\|39997142, gi\|... - gi\|39997142\|ref\|NP_953093.1\| sensory box/GGDEF family protein [Geobacter sulfurreducens PCA], gi\|399...	398.0	[0..2]	[362..405]
gi\|77918947, gi\|... - gi\|77918947\|ref\|YP_356762.1\| EAL and GGDEF domain-containing protein [Pelobacter carbinolicus DSM 23...	396.0	[0..1]	[361..890]
gi\|95134951, gi\|... - gi\|95929050\|ref\|ZP_01311795.1\| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Desulfu...	395.0	[0..1]	[359..412]
gi\|78195532, gi\|... - gi\|78224277\|ref\|YP_386024.1\| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) [Geobacter...	393.0	[0..1]	[357..539]
gi\|46119473, gi\|... - gi\|67923273\|ref\|ZP_00516758.1\| GGDEF [Crocosphaera watsonii WH 8501], gi\|67854899\|gb\|EAM50173.1\| GGD...	393.0	[0..2]	[356..348]
gi\|118581402, gi... - gi\|71839449\|ref\|ZP_00679198.1\| PAS:GGDEF [Pelobacter propionicus DSM 2379], gi\|71740145\|gb\|EAO35314....	393.0	[0..1]	[357..512]

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Predicted Domain #1

Region A:
Residues: [1-98]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSCDFRVFL QEFGTTVHLS LPGSVSEKER LLLKLLMQGM SVTEISQYRN RSAKTISHQK  60
   61 KQLFEKLGIQ SDITFWRDIF FQYNPEIISA TGSNSHRY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	6.0
Match:	1w25A
Description:	Response regulator PleD in complex with c-diGMP
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [99-362]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 INDNHYHHIV TPEAISLALE NHEFKPWIQP VFCAQTGVLT GCEVLVRWEH PQTGIIPPDQ  60
   61 FIPLAESSGL IVIMTRQLMK QTADILMPVK HLLPDNFHIG INVSAGCFLA AGFEKECLNL 120
  121 VNKLGNDKIK LVLELTERNP IPVTPEARAI FDSLHQHNIT FALDDFGTGY ATYRYLQAFP 180
  181 VDFIKIDKSF VQMASVDEIS GHIVDNIVEL ARKPGLSIVA EGVETQEQAD LMIGKGVHFL 240
  241 QGYLYSPPVP GNKFISEWVM KAGG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	81.39794
Match:	2r6oA
Description:	No description for 2r6oA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits