YRC Public Data Repository - Protein Structure Prediction

Protein:	YAGZ_ECOLI
Organism:	Escherichia coli
Length:	195 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YAGZ_ECOLI.

Description	E-value	Query Range	Subject Range
ECPA_ECOLC - Common pilus major fimbrillin subunit EcpA OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks... ECPA_ECOSE - Common pilus major fimbrillin subunit EcpA OS=Escherichia coli (strain SE11) GN=ecpA PE=3 SV=1 gi\|75231147, gi\|... - gi\|75231147\|ref\|ZP_00717569.1\| hypothetical protein EcolB7_01000730 [Escherichia coli B7A], gi\|19116... ECPA_ECO24 - Common pilus major fimbrillin subunit EcpA OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=e... gi\|218552859, gi... - gi\|218552859\|ref\|YP_002385772.1\| E. coli common pilus (ECP) [Escherichia coli IAI1], gi\|218359627\|em... gi\|124526634, gi... - gi\|124526634\|ref\|ZP_01698543.1\| conserved hypothetical protein [Escherichia coli B], gi\|124501690\|gb...	254.0	[0..1]	[195..1]
ECPA_ECO27 - Common pilus major fimbrillin subunit EcpA OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=e... ECPA_ECOL5 - Common pilus major fimbrillin subunit EcpA OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=ecp... ECPA_ECOK1 - Common pilus major fimbrillin subunit EcpA OS=Escherichia coli O1:K1 / APEC GN=ecpA PE=3 SV=1 ECPA_ECO81 - Common pilus major fimbrillin subunit EcpA OS=Escherichia coli O81 (strain ED1a) GN=ecpA PE=3 SV=1 ECPA_ECOKI - Common pilus major fimbrillin subunit EcpA OS=Escherichia coli O18:K1:H7 (strain IHE3034 / ExPEC) GN... gi\|227884701, gi... - gi\|227884701\|ref\|ZP_04002506.1\| fimbrillin MatB [Escherichia coli 83972], gi\|227838302\|gb\|EEJ48768.1... ECPA_ECOLX - Common pilus major fimbrillin subunit EcpA OS=Escherichia coli GN=ecpA PE=3 SV=1 gi\|226898932, gi... - gi\|237707722\|ref\|ZP_04538203.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... sp\|B7UJE1\|ECPA_ECO27 - Common pilus major fimbrillin subunit EcpA OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=e... gi\|190908512, gi... - gi\|75241934\|ref\|ZP_00725753.1\| COG3210: Large exoproteins involved in heme utilization or adhesion [...	251.0	[0..1]	[195..1]
ECPA_SHIBS - Common pilus major fimbrillin subunit EcpA OS=Shigella boydii serotype 4 (strain Sb227) GN=ecpA PE=3...	251.0	[0..2]	[195..18]
ECPA_ECOL6 - Common pilus major fimbrillin subunit EcpA OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / ... MATB_ECOL6 - Fimbrillin matB homolog OS=Escherichia coli O6 GN=matB PE=3 SV=1	250.0	[0..1]	[195..1]
ECPA_ECOUT - Common pilus major fimbrillin subunit EcpA OS=Escherichia coli (strain UTI89 / UPEC) GN=ecpA PE=3 SV...	249.0	[0..2]	[195..12]
gi\|83586339 - gi\|83586339\|ref\|ZP_00924974.1\| COG3210: Large exoproteins involved in heme utilization or adhesion [...	233.0	[0..17]	[195..1]
gi\|37913118 - gi\|37913118\|gb\|AAR05380.1\| MatB protein precursor [Aeromonas hydrophila]	211.0	[0..1]	[193..1]
gi\|77963542 - gi\|77963542\|ref\|ZP_00827351.1\| COG5295: Autotransporter adhesin [Yersinia mollaretii ATCC 43969]	171.0	[0..2]	[194..3]

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Predicted Domain #1

Region A:
Residues: [1-195]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKKVLAIAL VTVFTGMGVA QAADVTAQAV ATWSATAKKD TTSKLVVTPL GSLAFQYAEG  60
   61 IKGFNSQKGL FDVAIEGDST ATAFKLTSRL ITNTLTQLDT SGSTLNVGVD YNGAAVEKTG 120
  121 DTVMIDTANG VLGGNLSPLA NGYNASNRTT AQDGFTFSII SGTTNGTTAV TDYSTLPEGI 180
  181 WSGDVSVQFD ATWTS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits