YRC Public Data Repository - Protein Structure Prediction

Protein:	YAGT_ECOLI
Organism:	Escherichia coli
Length:	229 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YAGT_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|254590845, gi... - gi\|254791445\|ref\|YP_003076282.1\| predicted xanthine dehydrogenase, 2Fe-2S subunit [Escherichia coli ... YAGT_ECO57 - Putative xanthine dehydrogenase YagT iron-sulfur-binding subunit OS=Escherichia coli O157:H7 GN=yagT... gi\|208737241, gi... - gi\|208823048\|ref\|ZP_03263366.1\| iron-sulfur cluster binding protein [Escherichia coli O157:H7 str. E... gi\|209160571, gi... - gi\|209399171\|ref\|YP_002268908.1\| iron-sulfur cluster binding protein [Escherichia coli O157:H7 str. ... gi\|217325688, gi... - gi\|217325688\|ref\|ZP_03441772.1\| iron-sulfur cluster binding protein [Escherichia coli O157:H7 str. T... gi\|189377850, gi... - gi\|189377850\|gb\|EDU96266.1\| iron-sulfur cluster binding protein [Escherichia coli O157:H7 str. EC508... gi\|195937766 - gi\|195937766\|ref\|ZP_03083148.1\| putative xanthine dehydrogenase iron-sulfur-binding subunit [Escheri... gi\|12513069, gi\|... - gi\|15799991\|ref\|NP_286003.1\| putative xanthine dehydrogenase iron-sulfur-binding subunit [Escherichi... gi\|208728148, gi... - gi\|208808347\|ref\|ZP_03250684.1\| iron-sulfur cluster binding protein [Escherichia coli O157:H7 str. E... gi\|25316918, gi\|... - pir\|\|G85518 glucuronolactone reductase (EC 1.1.1.20), probable [imported] - Escherichia coli (strain... gi\|208816284, gi... - gi\|208816284\|ref\|ZP_03257463.1\| iron-sulfur cluster binding protein [Escherichia coli O157:H7 str. E... gi\|189361377, gi... - gi\|189361377\|gb\|EDU79796.1\| iron-sulfur cluster binding protein [Escherichia coli O157:H7 str. EC448... gi\|168775419, gi... - gi\|187769060\|gb\|EDU32904.1\| iron-sulfur cluster binding protein [Escherichia coli O157:H7 str. EC419... gi\|13359773, gi\|... - gi\|15829570\|ref\|NP_308343.1\| putative xanthine dehydrogenase iron-sulfur-binding subunit [Escherichi... gi\|188999893, gi... - gi\|188999893\|gb\|EDU68879.1\| iron-sulfur cluster binding protein [Escherichia coli O157:H7 str. EC407... gi\|189371697, gi... - gi\|189371697\|gb\|EDU90113.1\| iron-sulfur cluster binding protein [Escherichia coli O157:H7 str. EC869... gi\|188016482, gi... - gi\|188016482\|gb\|EDU54604.1\| iron-sulfur cluster binding protein [Escherichia coli O157:H7 str. EC411... gi\|189356882, gi... - gi\|189356882\|gb\|EDU75301.1\| iron-sulfur cluster binding protein [Escherichia coli O157:H7 str. EC440... gi\|168761925, gi... - gi\|189367669\|gb\|EDU86085.1\| iron-sulfur cluster binding protein [Escherichia coli O157:H7 str. EC450...	236.0	[0..1]	[229..1]
gi\|75189366, gi\|... - gi\|75189366\|ref\|ZP_00702633.1\| COG2080: Aerobic-type carbon monoxide dehydrogenase, small subunit Co...	234.0	[0..1]	[229..1]
gi\|253774725, gi... - gi\|254287167\|ref\|YP_003052915.1\| predicted xanthine dehydrogenase, 2Fe-2S subunit [Escherichia coli ... gi\|194438236, gi... - gi\|83586334\|ref\|ZP_00924969.1\| COG2080: Aerobic-type carbon monoxide dehydrogenase, small subunit Co... gi\|251783807, gi... - gi\|251783807\|ref\|YP_002998111.1\| hypothetical protein B21_00248 [Escherichia coli BL21], gi\|24237608... gi\|253972265, gi... - gi\|254160364\|ref\|YP_003043472.1\| predicted xanthine dehydrogenase, 2Fe-2S subunit [Escherichia coli ...	233.0	[0..1]	[229..1]
gi\|209917495, gi... - gi\|209917495\|ref\|YP_002291579.1\| putative xanthine dehydrogenase iron-sulfur-binding subunit [Escher... gi\|193064370, gi... - gi\|75257683\|ref\|ZP_00729174.1\| COG2080: Aerobic-type carbon monoxide dehydrogenase, small subunit Co... gi\|191165689, gi... - gi\|75231152\|ref\|ZP_00717574.1\| COG2080: Aerobic-type carbon monoxide dehydrogenase, small subunit Co... gi\|75211180, gi\|... - gi\|75211180\|ref\|ZP_00711287.1\| COG2080: Aerobic-type carbon monoxide dehydrogenase, small subunit Co...	232.0	[0..1]	[229..1]
gi\|124501698, gi... - gi\|124526642\|ref\|ZP_01698551.1\| (2Fe-2S)-binding domain protein [Escherichia coli B], gi\|124501698\|g... gi\|169756255, gi... - gi\|170021327\|ref\|YP_001726281.1\| putative xanthine dehydrogenase iron-sulfur-binding subunit [Escher... gi\|188493476, gi... - gi\|75513554\|ref\|ZP_00735945.1\| COG2080: Aerobic-type carbon monoxide dehydrogenase, small subunit Co...	230.0	[0..1]	[229..1]
gi\|25316920 - pir\|\|G95420 probable oxidoreductase SMa2349 [imported] - Sinorhizobium meliloti (strain 1021) magapl... gi\|14524443, gi\|... - gi\|16263724\|ref\|NP_436517.1\| putative xanthine dehydrogenase iron-sulfur-binding subunit [Sinorhizob...	212.0	[0..16]	[226..6]
gi\|150377465, gi... - gi\|150377465\|ref\|YP_001314060.1\| putative xanthine dehydrogenase iron-sulfur-binding subunit [Sinorh...	208.0	[0..16]	[226..2]
gi\|77382339, gi\|... - gi\|77458336\|ref\|YP_347841.1\| putative xanthine dehydrogenase iron-sulfur-binding subunit [Pseudomona...	202.0	[0..17]	[226..3]
gi\|91777904, gi\|... - gi\|91777904\|ref\|YP_553112.1\| 2Fe-2S ferredoxin [Burkholderia xenovorans LB400], gi\|91690564\|gb\|ABE33...	202.0	[0..1]	[223..1]
gi\|115253621, gi... - gi\|116248971\|ref\|YP_764812.1\| putative xanthine dehydrogenase iron-sulfur-binding subunit [Rhizobium...	196.0	[0..17]	[226..7]

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Predicted Domain #1

Region A:
Residues: [1-229]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNQGEYPED NRVGKHEPHD LSLTRRDLIK VSAATAATAV VYPHSTLAAS VPAATPAPEI  60
   61 MPLTLKVNGK TEQLEVDTRT TLLDTLRENL HLIGTKKGCD HGQCGACTVL VNGRRLNACL 120
  121 TLAVMHQGAE ITTIEGLGSP DNLHPMQAAF IKHDGFQCGY CTSGQICSSV AVLKEIQDGI 180
  181 PSHVTVDLVS APETTADEIR ERMSGNICRC GAYANILAAI EDAAGEIKS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.69897
Match:	1ffuA
Description:	Carbon monoxide (CO) dehydrogenase iron-sulfur protein, C-domain; Carbone monoxide (CO) dehydrogenase iron-sulfur protein, N-domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
electron carrier activity	1.8452767229444	bayes_pls_golite062009
oxidoreductase activity	1.29798120961328	bayes_pls_golite062009
catalytic activity	0.475559813757564	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: