YRC Public Data Repository - Protein Structure Prediction

Protein:	YAGB_ECOLI
Organism:	Escherichia coli
Length:	116 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YAGB_ECOLI.

Description	E-value	Query Range	Subject Range
gi\|7467005, gi\|1... - gi\|7467005\|pir\|\|B64752 yagB protein - Escherichia coli (strain K-12), gi\|1552835\|gb\|AAB08687.1\| simi... gi\|1786461, gi\|1... - gb\|AAC73369.1\| orf, hypothetical protein; CP4-6 prophage [Escherichia coli K12], gi\|16128251\|ref\|NP...	213.0	[0..1]	[116..10]
gi\|47600624 - gi\|47600624\|emb\|CAE55745.1\| hypothetical protein [Escherichia coli Nissle 1917] gi\|47600624 - gi\|47600624\|emb\|CAE55745.1\| hypothetical protein [Escherichia coli Nissle 1917]	204.0	[0..2]	[109..49]
gi\|75187726, gi\|... - gi\|75187726\|ref\|ZP_00700993.1\| hypothetical protein EcolE_01000963 [Escherichia coli E24377A], gi\|15...	203.0	[0..2]	[106..13]
gi\|26249511, gi\|... - gi\|26249511\|ref\|NP_755551.1\| hypothetical protein c3676 [Escherichia coli CFT073], gi\|26109919\|gb\|AA...	201.0	[0..2]	[107..14]
gi\|75211006 - gi\|75211006\|ref\|ZP_00711119.1\| hypothetical protein EcolB_01001803 [Escherichia coli B171] gi\|195183235 - gi\|195183235\|dbj\|BAG66778.1\| predicted protein [Escherichia coli O111:H-]	200.0	[0..2]	[106..13]
gi\|91075518, gi\|... - gi\|91213944\|ref\|YP_543930.1\| hypothetical protein UTI89_C4996 [Escherichia coli UTI89], gi\|91075518\|... gi\|110644740, gi... - gi\|110644740\|ref\|YP_672470.1\| hypothetical protein ECP_4633 [Escherichia coli 536], gi\|110346332\|gb\|... gi\|75242261 - gi\|75242261\|ref\|ZP_00726023.1\| hypothetical protein EcolF_01000716 [Escherichia coli F11] gi\|23954301 - gi\|23954301\|emb\|CAD42100.1\| hypothetical protein [Escherichia coli]	199.0	[0..2]	[106..13]

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Predicted Domain #1

Region A:
Residues: [1-116]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKDSTQTWG LKRDITPCFG ARLVQEGHRL HFLADRAGFT GSFSEVQTLQ LDEAFPHFVA  60
   61 HLELMLLSCE LNPRYAHCVT LYRNGLTGEA DTLGSHGYVY IAILNRHGFN RHLRVI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	51.30103
Match:	2inwA
Description:	No description for 2inwA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits